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1YOE

Crystal structure of a the E. coli pyrimidine nucleoside hydrolase YbeK with bound ribose

Functional Information from GO Data
ChainGOidnamespacecontents
A0005509molecular_functioncalcium ion binding
A0005515molecular_functionprotein binding
A0005829cellular_componentcytosol
A0006152biological_processpurine nucleoside catabolic process
A0006206biological_processpyrimidine nucleobase metabolic process
A0008477molecular_functionpurine nucleosidase activity
A0015949biological_processnucleobase-containing small molecule interconversion
A0016787molecular_functionhydrolase activity
A0016798molecular_functionhydrolase activity, acting on glycosyl bonds
A0016799molecular_functionhydrolase activity, hydrolyzing N-glycosyl compounds
A0032991cellular_componentprotein-containing complex
A0042802molecular_functionidentical protein binding
A0045437molecular_functionuridine nucleosidase activity
A0046133biological_processpyrimidine ribonucleoside catabolic process
A0050263molecular_functionribosylpyrimidine nucleosidase activity
A0051289biological_processprotein homotetramerization
Functional Information from PROSITE/UniProt
site_idPS01247
Number of Residues11
DetailsIUNH Inosine-uridine preferring nucleoside hydrolase family signature. DcDPGhDDAIA
ChainResidueDetails
AASP8-ALA18

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues3
DetailsAnnotated By Reference To The Literature 1mas
ChainResidueDetails
AASP10
AASN166
AHIS240

249697

PDB entries from 2026-02-25

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