1YHC
Crystal structure of Aquifex aeolicus LpxC deacetylase complexed with cacodylate
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0006629 | biological_process | lipid metabolic process |
| A | 0006796 | biological_process | phosphate-containing compound metabolic process |
| A | 0009245 | biological_process | lipid A biosynthetic process |
| A | 0016020 | cellular_component | membrane |
| A | 0016787 | molecular_function | hydrolase activity |
| A | 0019637 | biological_process | organophosphate metabolic process |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0103117 | molecular_function | UDP-3-O-acyl-N-acetylglucosamine deacetylase activity |
| A | 1901135 | biological_process | carbohydrate derivative metabolic process |
| B | 0003824 | molecular_function | catalytic activity |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0006629 | biological_process | lipid metabolic process |
| B | 0006796 | biological_process | phosphate-containing compound metabolic process |
| B | 0009245 | biological_process | lipid A biosynthetic process |
| B | 0016020 | cellular_component | membrane |
| B | 0016787 | molecular_function | hydrolase activity |
| B | 0019637 | biological_process | organophosphate metabolic process |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0103117 | molecular_function | UDP-3-O-acyl-N-acetylglucosamine deacetylase activity |
| B | 1901135 | biological_process | carbohydrate derivative metabolic process |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE ZN A 601 |
| Chain | Residue |
| A | HIS79 |
| A | THR191 |
| A | HIS238 |
| A | ASP242 |
| A | CAC401 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE ZN B 602 |
| Chain | Residue |
| B | CAC402 |
| B | HIS79 |
| B | THR191 |
| B | HIS238 |
| B | ASP242 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE ZN A 603 |
| Chain | Residue |
| A | GLY2 |
| A | GLU126 |
| B | ILE27 |
| B | HIS29 |
| B | GLU95 |
| site_id | AC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ZN A 606 |
| Chain | Residue |
| A | HIS58 |
| A | HIS200 |
| A | CL334 |
| A | CL336 |
| site_id | AC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ZN B 607 |
| Chain | Residue |
| B | HIS58 |
| B | HIS200 |
| B | CL335 |
| B | HOH947 |
| site_id | AC6 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE CAC A 401 |
| Chain | Residue |
| A | HIS58 |
| A | GLU78 |
| A | HIS79 |
| A | THR191 |
| A | HIS238 |
| A | ASP242 |
| A | HIS265 |
| A | SO4404 |
| A | ZN601 |
| A | PAM802 |
| site_id | AC7 |
| Number of Residues | 10 |
| Details | BINDING SITE FOR RESIDUE CAC B 402 |
| Chain | Residue |
| B | HIS58 |
| B | GLU78 |
| B | HIS79 |
| B | THR191 |
| B | HIS238 |
| B | ASP242 |
| B | HIS265 |
| B | SO4403 |
| B | ZN602 |
| B | PAM801 |
| site_id | AC8 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE SO4 B 403 |
| Chain | Residue |
| B | THR56 |
| B | HIS58 |
| B | LYS239 |
| B | GLY264 |
| B | HIS265 |
| B | CAC402 |
| B | PAM801 |
| B | HOH881 |
| B | HOH946 |
| site_id | AC9 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE SO4 A 404 |
| Chain | Residue |
| A | HIS58 |
| A | LYS239 |
| A | GLY264 |
| A | HIS265 |
| A | CAC401 |
| A | PAM802 |
| A | HOH931 |
| A | HOH969 |
| site_id | BC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE CL A 334 |
| Chain | Residue |
| A | ASN57 |
| A | HIS58 |
| A | PHE167 |
| A | HIS200 |
| A | CL336 |
| A | ZN606 |
| site_id | BC2 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE CL B 335 |
| Chain | Residue |
| B | HIS58 |
| B | HIS200 |
| B | ZN607 |
| site_id | BC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE CL A 336 |
| Chain | Residue |
| A | HIS58 |
| A | HIS200 |
| A | CL334 |
| A | ZN606 |
| site_id | BC4 |
| Number of Residues | 16 |
| Details | BINDING SITE FOR RESIDUE PAM B 801 |
| Chain | Residue |
| A | TYR224 |
| A | PAM802 |
| B | ILE18 |
| B | HIS58 |
| B | PHE192 |
| B | ALA193 |
| B | GLU197 |
| B | ILE198 |
| B | ILE201 |
| B | GLY210 |
| B | VAL217 |
| B | CAC402 |
| B | SO4403 |
| B | HOH827 |
| B | HOH939 |
| B | HOH940 |
| site_id | BC5 |
| Number of Residues | 13 |
| Details | BINDING SITE FOR RESIDUE PAM A 802 |
| Chain | Residue |
| A | CAC401 |
| A | SO4404 |
| B | PAM801 |
| A | HIS19 |
| A | HIS58 |
| A | PHE192 |
| A | GLU197 |
| A | ILE198 |
| A | ILE201 |
| A | GLY210 |
| A | SER211 |
| A | LEU212 |
| A | VAL217 |
| site_id | BC6 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL A 701 |
| Chain | Residue |
| A | VAL53 |
| A | THR56 |
| A | GLU158 |
| A | ARG170 |
| A | GLN171 |
| A | LYS172 |
| A | LYS273 |
| A | HOH888 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 2 |
| Details | ACT_SITE: Proton donor => ECO:0000255|HAMAP-Rule:MF_00388, ECO:0000305|PubMed:15705580 |
| Chain | Residue | Details |
| A | HIS265 | |
| B | HIS265 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 6 |
| Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00388, ECO:0000269|PubMed:12819349, ECO:0000269|PubMed:15705580, ECO:0007744|PDB:1P42, ECO:0007744|PDB:1YH8, ECO:0007744|PDB:1YHC |
| Chain | Residue | Details |
| A | HIS79 | |
| A | HIS238 | |
| A | ASP242 | |
| B | HIS79 | |
| B | HIS238 | |
| B | ASP242 |
