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1Y5B

Dianhydrosugar-based benzamidine, factor Xa specific inhibitor in complex with bovine trypsin mutant

Functional Information from GO Data
ChainGOidnamespacecontents
T0004175molecular_functionendopeptidase activity
T0004252molecular_functionserine-type endopeptidase activity
T0005515molecular_functionprotein binding
T0005576cellular_componentextracellular region
T0005615cellular_componentextracellular space
T0006508biological_processproteolysis
T0007586biological_processdigestion
T0008236molecular_functionserine-type peptidase activity
T0046872molecular_functionmetal ion binding
T0097180cellular_componentserine protease inhibitor complex
T0097655molecular_functionserpin family protein binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 T 3001
ChainResidue
TSER164
TASP165
TSER166
TTL3720
THOH9203

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 T 3002
ChainResidue
THOH9071
THOH9088
THOH9189
THOH9197
TASN95
TASN100
TSER110
TALA111

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA T 3004
ChainResidue
TGLU70
TASN72
TVAL75
TGLU80
THOH9002
THOH9006

site_idAC4
Number of Residues21
DetailsBINDING SITE FOR RESIDUE TL3 T 720
ChainResidue
THIS57
TTYR99
TCYS128
TSER130
TASP165
TASP189
TSER190
TCYS191
TGLN192
TSER195
TSER214
TTRP215
TGLY216
TGLY219
TCYS220
TGLY226
TSO43001
THOH9026
THOH9063
THOH9166
THOH9220

site_idAC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE IMD T 2
ChainResidue
TTYR20
TCYS22
TTHR26
TLYS159

Functional Information from PROSITE/UniProt
site_idPS00134
Number of Residues6
DetailsTRYPSIN_HIS Serine proteases, trypsin family, histidine active site. VSAAHC
ChainResidueDetails
TVAL53-CYS58

site_idPS00135
Number of Residues12
DetailsTRYPSIN_SER Serine proteases, trypsin family, serine active site. DScqGDSGGPVV
ChainResidueDetails
TASP189-VAL200

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsACT_SITE: Charge relay system
ChainResidueDetails
TLYS60
TLEU105
TPRO198

site_idSWS_FT_FI2
Number of Residues7
DetailsBINDING:
ChainResidueDetails
TILE73
TVAL75
TGLY78
TILE83
TGLN192
TSER195
TPRO198

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1a0j
ChainResidueDetails
TASP102
THIS57

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1a0j
ChainResidueDetails
TSER195
TGLY196

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 1a0j
ChainResidueDetails
TSER195
TGLY193

site_idCSA4
Number of Residues3
DetailsAnnotated By Reference To The Literature 1a0j
ChainResidueDetails
TASP102
TSER195
THIS57

site_idCSA5
Number of Residues4
DetailsAnnotated By Reference To The Literature 1a0j
ChainResidueDetails
TASP102
TSER195
TGLY193
THIS57

site_idCSA6
Number of Residues4
DetailsAnnotated By Reference To The Literature 1a0j
ChainResidueDetails
TASP102
TSER195
THIS57
TGLY196

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PDB entries from 2024-07-24

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