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1Y1O

X-ray crystal Structure of Penicillin-binding protein-related factor A from Bacillus stearothermophilus

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003676molecular_functionnucleic acid binding
A0004519molecular_functionendonuclease activity
A0005737cellular_componentcytoplasm
A0006281biological_processDNA repair
A0006310biological_processDNA recombination
A0007059biological_processchromosome segregation
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0003676molecular_functionnucleic acid binding
B0004519molecular_functionendonuclease activity
B0005737cellular_componentcytoplasm
B0006281biological_processDNA repair
B0006310biological_processDNA recombination
B0007059biological_processchromosome segregation
B0046872molecular_functionmetal ion binding
C0000287molecular_functionmagnesium ion binding
C0003676molecular_functionnucleic acid binding
C0004519molecular_functionendonuclease activity
C0005737cellular_componentcytoplasm
C0006281biological_processDNA repair
C0006310biological_processDNA recombination
C0007059biological_processchromosome segregation
C0046872molecular_functionmetal ion binding
D0000287molecular_functionmagnesium ion binding
D0003676molecular_functionnucleic acid binding
D0004519molecular_functionendonuclease activity
D0005737cellular_componentcytoplasm
D0006281biological_processDNA repair
D0006310biological_processDNA recombination
D0007059biological_processchromosome segregation
D0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 301
ChainResidue
AASN38
AHIS53
ALYS54
AHOH346

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 302
ChainResidue
AHIS177
ASER178
AHOH336
CLYS106

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 303
ChainResidue
BARG45
BHIS53
BLYS54
BHOH324
BASN38

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 304
ChainResidue
BTHR103
BLYS104
BASN105
BLYS112

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 305
ChainResidue
BASP148
BHIS151
BHIS175
BHIS177
BHOH313
BHOH339

site_idAC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 306
ChainResidue
BTYR43
BARG47
BILE49
CGLN170
CARG174

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 C 307
ChainResidue
CASN38
CARG45
CHIS53
CLYS54
CHOH354
CHOH357

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 C 308
ChainResidue
CTHR103
CLYS104
CPRO110
CLYS112
CASN113

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 309
ChainResidue
DARG45
DHIS53
DLYS54
DHOH333

site_idBC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 310
ChainResidue
DTHR103
DLYS104
DASN105
DLYS112

site_idBC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 D 311
ChainResidue
AGLN170
AARG174
DTYR43
DARG47

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NI A 321
ChainResidue
AHIS151
AGLU171
AHIS175
AHOH340

site_idBC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE NI C 322
ChainResidue
CHIS151
CGLU171
CHIS175
CHOH328

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsBINDING:
ChainResidueDetails
ATHR84
DTHR84
DASP86
DGLN118
AASP86
AGLN118
BTHR84
BASP86
BGLN118
CTHR84
CASP86
CGLN118

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000305
ChainResidueDetails
AGLU99
BGLU99
CGLU99
DGLU99

site_idSWS_FT_FI3
Number of Residues4
DetailsSITE: Transition state stabilizer => ECO:0000305
ChainResidueDetails
ALYS101
BLYS101
CLYS101
DLYS101

222036

PDB entries from 2024-07-03

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