1XM5

Crystal structure of metal-dependent hydrolase ybeY from E. coli, Pfam UPF0054

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0004222	molecular_function	metalloendopeptidase activity
A	0004518	molecular_function	nuclease activity
A	0004519	molecular_function	endonuclease activity
A	0004521	molecular_function	RNA endonuclease activity
A	0005515	molecular_function	protein binding
A	0005737	cellular_component	cytoplasm
A	0006364	biological_process	rRNA processing
A	0006412	biological_process	translation
A	0008270	molecular_function	zinc ion binding
A	0009408	biological_process	response to heat
A	0016151	molecular_function	nickel cation binding
A	0016787	molecular_function	hydrolase activity
A	0016892	molecular_function	RNA endonuclease activity producing 3'-phosphomonoesters, hydrolytic mechanism
A	0030490	biological_process	maturation of SSU-rRNA
A	0031564	biological_process	transcription antitermination
A	0042254	biological_process	ribosome biogenesis
A	0042274	biological_process	ribosomal small subunit biogenesis
A	0046872	molecular_function	metal ion binding
B	0004222	molecular_function	metalloendopeptidase activity
B	0004518	molecular_function	nuclease activity
B	0004519	molecular_function	endonuclease activity
B	0004521	molecular_function	RNA endonuclease activity
B	0005515	molecular_function	protein binding
B	0005737	cellular_component	cytoplasm
B	0006364	biological_process	rRNA processing
B	0006412	biological_process	translation
B	0008270	molecular_function	zinc ion binding
B	0009408	biological_process	response to heat
B	0016151	molecular_function	nickel cation binding
B	0016787	molecular_function	hydrolase activity
B	0016892	molecular_function	RNA endonuclease activity producing 3'-phosphomonoesters, hydrolytic mechanism
B	0030490	biological_process	maturation of SSU-rRNA
B	0031564	biological_process	transcription antitermination
B	0042254	biological_process	ribosome biogenesis
B	0042274	biological_process	ribosomal small subunit biogenesis
B	0046872	molecular_function	metal ion binding
C	0004222	molecular_function	metalloendopeptidase activity
C	0004518	molecular_function	nuclease activity
C	0004519	molecular_function	endonuclease activity
C	0004521	molecular_function	RNA endonuclease activity
C	0005515	molecular_function	protein binding
C	0005737	cellular_component	cytoplasm
C	0006364	biological_process	rRNA processing
C	0006412	biological_process	translation
C	0008270	molecular_function	zinc ion binding
C	0009408	biological_process	response to heat
C	0016151	molecular_function	nickel cation binding
C	0016787	molecular_function	hydrolase activity
C	0016892	molecular_function	RNA endonuclease activity producing 3'-phosphomonoesters, hydrolytic mechanism
C	0030490	biological_process	maturation of SSU-rRNA
C	0031564	biological_process	transcription antitermination
C	0042254	biological_process	ribosome biogenesis
C	0042274	biological_process	ribosomal small subunit biogenesis
C	0046872	molecular_function	metal ion binding
D	0004222	molecular_function	metalloendopeptidase activity
D	0004518	molecular_function	nuclease activity
D	0004519	molecular_function	endonuclease activity
D	0004521	molecular_function	RNA endonuclease activity
D	0005515	molecular_function	protein binding
D	0005737	cellular_component	cytoplasm
D	0006364	biological_process	rRNA processing
D	0006412	biological_process	translation
D	0008270	molecular_function	zinc ion binding
D	0009408	biological_process	response to heat
D	0016151	molecular_function	nickel cation binding
D	0016787	molecular_function	hydrolase activity
D	0016892	molecular_function	RNA endonuclease activity producing 3'-phosphomonoesters, hydrolytic mechanism
D	0030490	biological_process	maturation of SSU-rRNA
D	0031564	biological_process	transcription antitermination
D	0042254	biological_process	ribosome biogenesis
D	0042274	biological_process	ribosomal small subunit biogenesis
D	0046872	molecular_function	metal ion binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	3
Details	BINDING SITE FOR RESIDUE NI A 5001

Chain	Residue
A	HIS1114
A	HIS1118
A	HIS1124

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site_id	AC2
Number of Residues	3
Details	BINDING SITE FOR RESIDUE NI B 5002

Chain	Residue
B	HIS2114
B	HIS2118
B	HIS2124

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site_id	AC3
Number of Residues	3
Details	BINDING SITE FOR RESIDUE NI C 5003

Chain	Residue
C	HIS3114
C	HIS3118
C	HIS3124

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site_id	AC4
Number of Residues	3
Details	BINDING SITE FOR RESIDUE NI D 5004

Chain	Residue
D	HIS4114
D	HIS4118
D	HIS4124

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Functional Information from PROSITE/UniProt

site_id	PS01306
Number of Residues	11
Details	UPF0054 Uncharacterized protein family UPF0054 signature. HGsLHLLGYdH

Chain	Residue	Details
A	HIS1114-HIS1124

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Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	12
Details	Binding site: {"evidences":[{"evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

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