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1XM5

Crystal structure of metal-dependent hydrolase ybeY from E. coli, Pfam UPF0054

Functional Information from GO Data
ChainGOidnamespacecontents
A0004222molecular_functionmetalloendopeptidase activity
A0004519molecular_functionendonuclease activity
A0004521molecular_functionRNA endonuclease activity
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0006364biological_processrRNA processing
A0006412biological_processtranslation
A0008270molecular_functionzinc ion binding
A0009408biological_processresponse to heat
A0016151molecular_functionnickel cation binding
A0016892molecular_functionRNA endonuclease activity, producing 3'-phosphomonoesters
A0030490biological_processmaturation of SSU-rRNA
A0031564biological_processtranscription antitermination
A0042254biological_processribosome biogenesis
A0042274biological_processribosomal small subunit biogenesis
A0046872molecular_functionmetal ion binding
B0004222molecular_functionmetalloendopeptidase activity
B0004519molecular_functionendonuclease activity
B0004521molecular_functionRNA endonuclease activity
B0005515molecular_functionprotein binding
B0005737cellular_componentcytoplasm
B0006364biological_processrRNA processing
B0006412biological_processtranslation
B0008270molecular_functionzinc ion binding
B0009408biological_processresponse to heat
B0016151molecular_functionnickel cation binding
B0016892molecular_functionRNA endonuclease activity, producing 3'-phosphomonoesters
B0030490biological_processmaturation of SSU-rRNA
B0031564biological_processtranscription antitermination
B0042254biological_processribosome biogenesis
B0042274biological_processribosomal small subunit biogenesis
B0046872molecular_functionmetal ion binding
C0004222molecular_functionmetalloendopeptidase activity
C0004519molecular_functionendonuclease activity
C0004521molecular_functionRNA endonuclease activity
C0005515molecular_functionprotein binding
C0005737cellular_componentcytoplasm
C0006364biological_processrRNA processing
C0006412biological_processtranslation
C0008270molecular_functionzinc ion binding
C0009408biological_processresponse to heat
C0016151molecular_functionnickel cation binding
C0016892molecular_functionRNA endonuclease activity, producing 3'-phosphomonoesters
C0030490biological_processmaturation of SSU-rRNA
C0031564biological_processtranscription antitermination
C0042254biological_processribosome biogenesis
C0042274biological_processribosomal small subunit biogenesis
C0046872molecular_functionmetal ion binding
D0004222molecular_functionmetalloendopeptidase activity
D0004519molecular_functionendonuclease activity
D0004521molecular_functionRNA endonuclease activity
D0005515molecular_functionprotein binding
D0005737cellular_componentcytoplasm
D0006364biological_processrRNA processing
D0006412biological_processtranslation
D0008270molecular_functionzinc ion binding
D0009408biological_processresponse to heat
D0016151molecular_functionnickel cation binding
D0016892molecular_functionRNA endonuclease activity, producing 3'-phosphomonoesters
D0030490biological_processmaturation of SSU-rRNA
D0031564biological_processtranscription antitermination
D0042254biological_processribosome biogenesis
D0042274biological_processribosomal small subunit biogenesis
D0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NI A 5001
ChainResidue
AHIS1114
AHIS1118
AHIS1124

site_idAC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NI B 5002
ChainResidue
BHIS2114
BHIS2118
BHIS2124

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NI C 5003
ChainResidue
CHIS3114
CHIS3118
CHIS3124

site_idAC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NI D 5004
ChainResidue
DHIS4114
DHIS4118
DHIS4124

Functional Information from PROSITE/UniProt
site_idPS01306
Number of Residues11
DetailsUPF0054 Uncharacterized protein family UPF0054 signature. HGsLHLLGYdH
ChainResidueDetails
AHIS1114-HIS1124

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsBINDING: BINDING => ECO:0000305
ChainResidueDetails
AHIS1114
DHIS4114
DHIS4118
DHIS4124
AHIS1118
AHIS1124
BHIS2114
BHIS2118
BHIS2124
CHIS3114
CHIS3118
CHIS3124

222036

PDB entries from 2024-07-03

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