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1XEM

High Resolution Crystal Structure of Escherichia coli Zinc- Peptide Deformylase bound to formate

Functional Information from GO Data
ChainGOidnamespacecontents
A0005515molecular_functionprotein binding
A0005829cellular_componentcytosol
A0006412biological_processtranslation
A0008198molecular_functionferrous iron binding
A0008270molecular_functionzinc ion binding
A0016787molecular_functionhydrolase activity
A0042586molecular_functionpeptide deformylase activity
A0043022molecular_functionribosome binding
A0043686biological_processco-translational protein modification
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 401
ChainResidue
AGLN50
ACYS90
AHIS132
AHIS136
AFMT501

site_idAC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE FMT A 501
ChainResidue
AHIS132
AGLU133
AHIS136
AZN401
AGLY45
AGLN50
ACYS90
ALEU91

site_idAC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE FMT A 502
ChainResidue
AARG69
AVAL71
AARG113
AFMT505
AHOH519
AHOH562
AHOH572
AHOH630
AHOH644

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FMT A 503
ChainResidue
AGLN131
AMET134
AFMT509
AHOH546
AHOH590
AHOH596
AHOH736

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FMT A 504
ChainResidue
AILE8
APRO9
AASP10
AARG14
AHOH671
AHOH674
AHOH718

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FMT A 505
ChainResidue
AASP112
AASP114
AFMT502
AHOH562
AHOH630
AHOH683

site_idAC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FMT A 506
ChainResidue
ALYS80
ASER81
AHOH580
AHOH637
AHOH707
AHOH707

site_idAC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE FMT A 507
ChainResidue
ALYS80
AGLU83
AFMT509
AHOH574
AHOH594
AHOH596
AHOH669
AHOH726
AHOH736

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT A 508
ChainResidue
AHIS7
AGLU41
AHOH575
AHOH748
AHOH786

site_idBC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE FMT A 509
ChainResidue
AGLN131
AASP135
ATYR145
AFMT503
AFMT507
AHOH521
AHOH574
AHOH669

site_idBC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FMT A 510
ChainResidue
AGLU95
AGLN96
ALYS157
AHOH545
AHOH577
AHOH716
AHOH734

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: ACT_SITE => ECO:0000269|PubMed:9846875
ChainResidueDetails
AMET134

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING: BINDING => ECO:0000269|PubMed:9846875
ChainResidueDetails
ALEU91
AGLU133
ALEU137

Catalytic Information from CSA
site_idMCSA1
Number of Residues7
DetailsM-CSA 98
ChainResidueDetails
ALEU46activator, hydrogen bond acceptor
AVAL51electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor
ALEU91metal ligand
ASER92electrostatic stabiliser, hydrogen bond donor
AGLU133metal ligand
AMET134hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
ALEU137metal ligand

218853

PDB entries from 2024-04-24

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