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1W9V

Specificity and affinity of natural product cyclopentapeptide argifin against Aspergillus fumigatus

Functional Information from GO Data
ChainGOidnamespacecontents
A0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
A0005975biological_processcarbohydrate metabolic process
A0008061molecular_functionchitin binding
B0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
B0005975biological_processcarbohydrate metabolic process
B0008061molecular_functionchitin binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 1438
ChainResidue
AHIS229
ALEU230
ALYS231
AASP232
AHOH2325
AHOH2569

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 1439
ChainResidue
AHOH2525
AHOH2571
AHOH2572
AGLY406
ATHR407
AHOH2524

site_idAC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 1440
ChainResidue
AHOH2129
AHOH2573
AHOH2574
AHOH2575
BARG283
BALA289

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 1437
ChainResidue
BTHR149
BASP150
BHOH2503
BHOH2504

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 B 1438
ChainResidue
BHIS229
BLEU230
BLYS231
BASP232
BHOH2264
BHOH2325
BHOH2505

site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 1439
ChainResidue
BASN181
BASP182

site_idAC7
Number of Residues20
DetailsBINDING SITE FOR CHAIN C OF ARGIFIN
ChainResidue
ATYR48
ATRP137
ATHR138
AASP175
AGLU177
ATYR178
AMET243
ATYR245
AASP246
APHE251
AARG301
AGLU322
ATRP384
CHOH2561
CHOH2562
CHOH2563
CHOH2564
CHOH2565
CHOH2566
CHOH2567

site_idAC8
Number of Residues26
DetailsBINDING SITE FOR CHAIN D OF ARGIFIN
ChainResidue
AHOH2452
BTYR48
BTRP137
BTHR138
BASP175
BGLU177
BTYR178
BMET243
BTYR245
BASP246
BPHE251
BARG301
BTRP384
BHOH2359
DHOH2490
DHOH2491
DHOH2493
DHOH2494
DHOH2495
DHOH2496
DHOH2497
DHOH2498
DHOH2499
DHOH2500
DHOH2501
DHOH2502

Functional Information from PROSITE/UniProt
site_idPS01095
Number of Residues9
DetailsGH18_1 Glycosyl hydrolases family 18 (GH18) active site signature. FDGLDIDwE
ChainResidueDetails
APHE169-GLU177

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues728
DetailsDomain: {"description":"GH18","evidences":[{"source":"PROSITE-ProRule","id":"PRU01258","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsActive site: {"description":"Proton donor","evidences":[{"source":"PROSITE-ProRule","id":"PRU01258","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues18
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU01258","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsGlycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"16183021","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2A3B","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues3
DetailsAnnotated By Reference To The Literature 1ctn
ChainResidueDetails
AASP175
ATYR245
AGLU177

site_idCSA2
Number of Residues3
DetailsAnnotated By Reference To The Literature 1ctn
ChainResidueDetails
BASP175
BTYR245
BGLU177

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 1ctn
ChainResidueDetails
AASP175
AGLU177

site_idCSA4
Number of Residues2
DetailsAnnotated By Reference To The Literature 1ctn
ChainResidueDetails
BASP175
BGLU177

site_idCSA5
Number of Residues2
DetailsAnnotated By Reference To The Literature 1ctn
ChainResidueDetails
AGLU177
AASP173

site_idCSA6
Number of Residues2
DetailsAnnotated By Reference To The Literature 1ctn
ChainResidueDetails
BGLU177
BASP173

238582

PDB entries from 2025-07-09

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