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1W77

2C-methyl-D-erythritol 4-phosphate cytidylyltransferase (IspD) from Arabidopsis thaliana

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0008299biological_processisoprenoid biosynthetic process
A0050518molecular_function2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
A0070567molecular_functioncytidylyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CD A1000
ChainResidue
AGLU121
AGLU191
AHIS271
AHOH2025

site_idAC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CU A1001
ChainResidue
AGLU167

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CU A1002
ChainResidue
AGLU138
AGLU141
AASP169
AHOH2061

site_idAC4
Number of Residues1
DetailsBINDING SITE FOR RESIDUE CU A1003
ChainResidue
AHOH2162

site_idAC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CU A1004
ChainResidue
ATHR286
AASP290

site_idAC6
Number of Residues11
DetailsBINDING SITE FOR RESIDUE C5P A3001
ChainResidue
ALEU84
AALA85
AGLY86
AGLY87
AGLY154
ALYS155
AGLU156
ASER160
AASP179
ALYS284
AHOH2166

Functional Information from PROSITE/UniProt
site_idPS01295
Number of Residues8
DetailsISPD 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. VCIHDSAR
ChainResidueDetails
AVAL175-ARG182

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsSite: {"description":"Transition state stabilizer","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues1
DetailsSite: {"description":"Positions MEP for the nucleophilic attack","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

246704

PDB entries from 2025-12-24

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