Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

1W3M

Crystal structure of tsushimycin

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE CA A 3013

Chain	Residue
A	VLL2
A	ASP5
A	GLY6
A	GLY8
A	VAL10
A	CL3014

site_id	AC2
Number of Residues	7
Details	BINDING SITE FOR RESIDUE CL A 3014

Chain	Residue
A	VAL10
A	HOH2003
A	CA3013
A	CL3015
A	VLL2
A	GLY6
A	GLY8

site_id	AC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CL A 3015

Chain	Residue
A	GLY8
A	HOH2013
A	CL3014
K	HOH2003

site_id	AC4
Number of Residues	5
Details	BINDING SITE FOR RESIDUE EOH B 3013

Chain	Residue
B	2AS4
B	ASP5
B	GLY6
D	VDL9
I	HOH2014

site_id	AC5
Number of Residues	8
Details	BINDING SITE FOR RESIDUE EOH B 3014

Chain	Residue
B	ASP5
B	ASP7
B	CA3017
G	HOH2013
I	ASP5
I	HOH2007
I	HOH2008
I	HOH2010

site_id	AC6
Number of Residues	7
Details	BINDING SITE FOR RESIDUE CA B 3015

Chain	Residue
B	ASP1
B	VLL2
B	ASP5
B	GLY6
B	GLY8
B	VAL10
B	HOH2005

site_id	AC7
Number of Residues	6
Details	BINDING SITE FOR RESIDUE CA B 3016

Chain	Residue
B	LNG0
B	ASP1
B	ASP7
B	HOH2010
E	2AS4
G	HOH2016

site_id	AC8
Number of Residues	7
Details	BINDING SITE FOR RESIDUE CA B 3017

Chain	Residue
B	ASP5
B	HOH2007
B	HOH2008
B	EOH3014
I	HOH2007
I	HOH2008
I	HOH2014

site_id	AC9
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CL B 3018

Chain	Residue
B	VLL2
B	CPI3
B	2AS4
B	HOH2002

site_id	BC1
Number of Residues	7
Details	BINDING SITE FOR RESIDUE EOH B 3019

Chain	Residue
B	2AS4
B	HOH2015
L	LNG0
L	ASP1
L	ASP7
L	GLY8
L	CL3014

site_id	BC2
Number of Residues	3
Details	BINDING SITE FOR RESIDUE EOH B 3020

Chain	Residue
G	VLL2
K	ASP1
K	CL3017

site_id	BC3
Number of Residues	1
Details	BINDING SITE FOR RESIDUE EOH B 3021

Chain	Residue
A	LNG0

site_id	BC4
Number of Residues	8
Details	BINDING SITE FOR RESIDUE EOH C 3013

Chain	Residue
A	ASP5
C	ASP5
C	HOH2006
C	HOH2013
C	HOH2014
C	HOH2015
C	HOH2026
C	CA3015

site_id	BC5
Number of Residues	6
Details	BINDING SITE FOR RESIDUE CA C 3014

Chain	Residue
C	VLL2
C	ASP5
C	GLY6
C	GLY8
C	VAL10
C	CL3017

site_id	BC6
Number of Residues	7
Details	BINDING SITE FOR RESIDUE CA C 3015

Chain	Residue
A	ASP5
A	HOH2008
A	HOH2011
C	ASP5
C	HOH2013
C	HOH2014
C	EOH3013

site_id	BC7
Number of Residues	7
Details	BINDING SITE FOR RESIDUE CA C 3016

Chain	Residue
C	LNG0
C	ASP1
C	ASP7
C	HOH2022
C	CL3017
E	HOH2015
L	2AS4

site_id	BC8
Number of Residues	10
Details	BINDING SITE FOR RESIDUE CL C 3017

Chain	Residue
C	HOH2022
C	CA3014
C	CA3016
C	CL3018
C	ASP1
C	VLL2
C	GLY6
C	GLY8
C	VAL10
C	HOH2007

site_id	BC9
Number of Residues	5
Details	BINDING SITE FOR RESIDUE CL C 3018

Chain	Residue
C	GLY8
C	HOH2007
C	HOH2023
C	CL3017
E	HOH2002

site_id	CC1
Number of Residues	7
Details	BINDING SITE FOR RESIDUE CA D 3013

Chain	Residue
D	ASP1
D	VLL2
D	ASP5
D	GLY6
D	GLY8
D	VAL10
D	HOH2007

site_id	CC2
Number of Residues	6
Details	BINDING SITE FOR RESIDUE CA D 3014

Chain	Residue
D	LNG0
D	ASP1
D	ASP7
D	HOH2001
G	2AS4
L	HOH2010

site_id	CC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CL D 3015

Chain	Residue
D	ASP1
D	VLL2
D	CPI3
D	2AS4

site_id	CC4
Number of Residues	7
Details	BINDING SITE FOR RESIDUE CA E 3013

Chain	Residue
E	ASP1
E	VLL2
E	ASP5
E	GLY6
E	GLY8
E	VAL10
E	HOH2004

site_id	CC5
Number of Residues	6
Details	BINDING SITE FOR RESIDUE CA E 3014

Chain	Residue
C	HOH2023
D	2AS4
E	LNG0
E	ASP1
E	ASP7
E	HOH2011

site_id	CC6
Number of Residues	3
Details	BINDING SITE FOR RESIDUE EOH E 3015

Chain	Residue
D	2AS4
E	HOH2011
L	EOH3015

site_id	CC7
Number of Residues	7
Details	BINDING SITE FOR RESIDUE CA F 3013

Chain	Residue
F	ASP1
F	VLL2
F	ASP5
F	GLY6
F	GLY8
F	VAL10
F	HOH2008

site_id	CC8
Number of Residues	6
Details	BINDING SITE FOR RESIDUE CA F 3014

Chain	Residue
F	LNG0
F	ASP1
F	ASP7
F	HOH2001
I	2AS4
J	HOH2013

site_id	CC9
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL F 3015

Chain	Residue
F	VLL2
F	CPI3
F	2AS4

site_id	DC1
Number of Residues	1
Details	BINDING SITE FOR RESIDUE EOH G 3013

Chain	Residue
H	PRO11

site_id	DC2
Number of Residues	8
Details	BINDING SITE FOR RESIDUE EOH G 3014

Chain	Residue
F	ASP7
F	HOH2007
F	HOH2018
G	ASP5
G	HOH2006
G	HOH2017
J	ASP7
J	HOH2010

site_id	DC3
Number of Residues	7
Details	BINDING SITE FOR RESIDUE CA G 3015

Chain	Residue
G	ASP1
G	VLL2
G	ASP5
G	GLY6
G	GLY8
G	VAL10
G	HOH2002

site_id	DC4
Number of Residues	6
Details	BINDING SITE FOR RESIDUE CA G 3016

Chain	Residue
B	HOH2014
C	2AS4
G	LNG0
G	ASP1
G	ASP7
G	HOH2012

site_id	DC5
Number of Residues	7
Details	BINDING SITE FOR RESIDUE CA G 3017

Chain	Residue
G	ASP7
G	HOH2004
G	HOH2013
G	HOH2014
G	HOH2015
J	HOH2005
J	HOH2006

site_id	DC6
Number of Residues	5
Details	BINDING SITE FOR RESIDUE EOH H 3013

Chain	Residue
H	ASP1
H	ASP5
H	GLY6
H	ASP7
H	HOH2006

site_id	DC7
Number of Residues	5
Details	BINDING SITE FOR RESIDUE EOH H 3014

Chain	Residue
H	ASP5
H	GLY6
H	HOH2016
H	HOH2017
L	ASP7

site_id	DC8
Number of Residues	6
Details	BINDING SITE FOR RESIDUE EOH H 3015

Chain	Residue
D	ASP7
F	VDL9
H	2AS4
H	ASP5
H	GLY6
H	HOH2016

site_id	DC9
Number of Residues	7
Details	BINDING SITE FOR RESIDUE CA H 3016

Chain	Residue
H	ASP1
H	VLL2
H	ASP5
H	GLY6
H	GLY8
H	VAL10
H	HOH2006

site_id	EC1
Number of Residues	6
Details	BINDING SITE FOR RESIDUE CA H 3017

Chain	Residue
A	2AS4
H	LNG0
H	ASP1
H	ASP7
H	HOH2004
I	HOH2015

site_id	EC2
Number of Residues	7
Details	BINDING SITE FOR RESIDUE CA I 3013

Chain	Residue
I	ASP1
I	VLL2
I	ASP5
I	GLY6
I	GLY8
I	VAL10
I	HOH2005

site_id	EC3
Number of Residues	6
Details	BINDING SITE FOR RESIDUE CA I 3014

Chain	Residue
H	HOH2015
I	LNG0
I	ASP1
I	ASP7
I	HOH2001
K	2AS4

site_id	EC4
Number of Residues	2
Details	BINDING SITE FOR RESIDUE EOH J 3013

Chain	Residue
E	LNG0
J	PRO11

site_id	EC5
Number of Residues	7
Details	BINDING SITE FOR RESIDUE CA J 3014

Chain	Residue
J	ASP1
J	VLL2
J	ASP5
J	GLY6
J	GLY8
J	VAL10
J	HOH2003

site_id	EC6
Number of Residues	6
Details	BINDING SITE FOR RESIDUE CA J 3015

Chain	Residue
F	HOH2020
H	2AS4
J	LNG0
J	ASP1
J	ASP7
J	HOH2011

site_id	EC7
Number of Residues	3
Details	BINDING SITE FOR RESIDUE CL J 3016

Chain	Residue
J	VLL2
J	CPI3
J	2AS4

site_id	EC8
Number of Residues	2
Details	BINDING SITE FOR RESIDUE EOH J 3017

Chain	Residue
E	HOH2001
J	LNG0

site_id	EC9
Number of Residues	3
Details	BINDING SITE FOR RESIDUE EOH K 3013

Chain	Residue
K	GLY6
K	HOH2002
K	HOH2018

site_id	FC1
Number of Residues	3
Details	BINDING SITE FOR RESIDUE EOH K 3014

Chain	Residue
K	GLY6
K	ASP7
K	HOH2018

site_id	FC2
Number of Residues	7
Details	BINDING SITE FOR RESIDUE CA K 3015

Chain	Residue
K	ASP1
K	VLL2
K	ASP5
K	GLY6
K	GLY8
K	VAL10
K	HOH2006

site_id	FC3
Number of Residues	6
Details	BINDING SITE FOR RESIDUE CA K 3016

Chain	Residue
A	HOH2013
J	2AS4
K	LNG0
K	ASP1
K	ASP7
K	HOH2001

site_id	FC4
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CL K 3017

Chain	Residue
B	EOH3020
K	VLL2
K	CPI3
K	2AS4

site_id	FC5
Number of Residues	6
Details	BINDING SITE FOR RESIDUE CA L 3013

Chain	Residue
L	VLL2
L	ASP5
L	GLY6
L	GLY8
L	VAL10
L	CL3014

site_id	FC6
Number of Residues	6
Details	BINDING SITE FOR RESIDUE CL L 3014

Chain	Residue
B	EOH3019
L	VLL2
L	GLY6
L	GLY8
L	VAL10
L	CA3013

site_id	FC7
Number of Residues	3
Details	BINDING SITE FOR RESIDUE EOH L 3015

Chain	Residue
C	VDL9
E	ASP7
E	EOH3015

site_id	FC8
Number of Residues	15
Details	BINDING SITE FOR CHAIN J OF RESIDUES 2 TO 4

Chain	Residue
A	VDL9
A	VAL10
A	PRO11
J	ASP1
J	ASP5
J	VAL10
J	PRO11
J	HOH2002
J	HOH2003
J	HOH2004
J	CA3014
J	CL3016
K	LNG0
K	ASP7
K	CA3016

site_id	FC9
Number of Residues	33
Details	BINDING SITE FOR CHAIN A OF TSUSHIMYCIN

Chain	Residue
A	HOH2001
A	HOH2002
A	HOH2003
A	HOH2006
A	HOH2007
A	HOH2008
A	HOH2009
A	HOH2010
A	HOH2011
A	HOH2012
A	HOH2013
A	CA3013
A	CL3014
A	CL3015
B	EOH3021
C	HOH2019
C	HOH2021
C	EOH3013
C	CA3015
F	2AS4
F	HOH2010
H	LNG0
H	ASP1
H	ASP7
H	CA3017
I	VDL9
I	VAL10
I	PRO11
J	CPI3
J	2AS4
K	ASP7
K	GLY8
K	VDL9

site_id	GC1
Number of Residues	33
Details	BINDING SITE FOR CHAIN B OF TSUSHIMYCIN

Chain	Residue
B	HOH2003
B	HOH2005
B	HOH2006
B	HOH2007
B	HOH2011
B	HOH2012
B	HOH2014
B	EOH3013
B	EOH3014
B	CA3015
B	CA3016
B	CA3017
B	CL3018
B	EOH3019
C	CPI3
C	2AS4
C	ASP5
D	VDL9
D	VAL10
D	PRO11
E	2AS4
G	LNG0
G	ASP7
G	GLY8
G	VDL9
G	HOH2014
I	HOH2014
J	LNG0
K	ASP1
K	VLL2
K	PRO11
L	LNG0
L	ASP7

site_id	GC2
Number of Residues	37
Details	BINDING SITE FOR CHAIN C OF TSUSHIMYCIN

Chain	Residue
A	HOH2011
B	VDL9
B	VAL10
B	PRO11
C	HOH2001
C	HOH2004
C	HOH2005
C	HOH2007
C	HOH2012
C	HOH2013
C	HOH2014
C	HOH2015
C	HOH2016
C	HOH2018
C	HOH2019
C	HOH2020
C	HOH2021
C	HOH2022
C	HOH2023
C	EOH3013
C	CA3014
C	CA3015
C	CA3016
C	CL3017
C	CL3018
D	CPI3
D	2AS4
E	ASP7
E	GLY8
E	VDL9
G	LNG0
G	ASP7
G	CA3016
J	LNG0
L	2AS4
L	HOH2004
L	EOH3015

site_id	GC3
Number of Residues	29
Details	BINDING SITE FOR CHAIN D OF TSUSHIMYCIN

Chain	Residue
B	CPI3
B	2AS4
B	ASP5
B	HOH2015
B	EOH3013
C	VDL9
C	VAL10
C	PRO11
D	HOH2005
D	HOH2006
D	HOH2007
D	HOH2008
D	HOH2009
D	HOH2010
D	CA3013
D	CA3014
D	CL3015
E	LNG0
E	ASP7
E	CA3014
E	EOH3015
F	ASP1
F	VLL2
G	2AS4
H	HOH2016
H	EOH3015
L	ASP7
L	GLY8
L	VDL9

site_id	GC4
Number of Residues	27
Details	BINDING SITE FOR CHAIN E OF TSUSHIMYCIN

Chain	Residue
B	LNG0
B	ASP7
B	CA3016
C	ASP7
C	GLY8
C	VDL9
C	HOH2018
D	2AS4
E	HOH2002
E	HOH2004
E	HOH2005
E	HOH2008
E	HOH2009
E	HOH2010
E	HOH2012
E	HOH2013
E	HOH2014
E	HOH2015
E	CA3013
E	CA3014
G	VDL9
G	VAL10
G	PRO11
J	EOH3013
L	CPI3
L	2AS4
L	EOH3015

site_id	GC5
Number of Residues	33
Details	BINDING SITE FOR CHAIN F OF TSUSHIMYCIN

Chain	Residue
A	LNG0
A	ASP1
A	ASP7
A	HOH2002
D	VLL2
D	PRO11
F	HOH2001
F	HOH2008
F	HOH2009
F	HOH2010
F	HOH2011
F	HOH2013
F	HOH2014
F	HOH2016
F	HOH2017
F	HOH2018
F	HOH2020
F	CA3013
F	CA3014
F	CL3015
G	LNG0
G	EOH3014
H	CPI3
H	2AS4
H	EOH3015
I	2AS4
J	LNG0
J	ASP7
J	GLY8
J	VDL9
K	VDL9
K	VAL10
K	PRO11

site_id	GC6
Number of Residues	31
Details	BINDING SITE FOR CHAIN G OF TSUSHIMYCIN

Chain	Residue
B	ASP7
B	GLY8
B	VDL9
B	PRO11
B	EOH3020
C	2AS4
D	LNG0
D	ASP7
D	CA3014
E	CPI3
E	2AS4
F	CPI3
G	HOH2001
G	HOH2002
G	HOH2003
G	HOH2006
G	HOH2010
G	HOH2011
G	HOH2014
G	HOH2016
G	HOH2017
G	EOH3014
G	CA3015
G	CA3016
G	CA3017
H	PRO11
I	LNG0
J	HOH2010
L	VDL9
L	VAL10
L	HOH2010

site_id	GC7
Number of Residues	32
Details	BINDING SITE FOR CHAIN H OF TSUSHIMYCIN

Chain	Residue
A	2AS4
F	VDL9
F	VAL10
G	LNG0
G	EOH3013
H	HOH2002
H	HOH2003
H	HOH2004
H	HOH2005
H	HOH2006
H	HOH2007
H	HOH2009
H	HOH2010
H	HOH2011
H	HOH2013
H	HOH2014
H	HOH2015
H	HOH2016
H	HOH2017
H	EOH3013
H	EOH3014
H	EOH3015
H	CA3016
H	CA3017
I	ASP7
I	GLY8
I	VDL9
J	LNG0
J	ASP7
J	CA3015
K	CPI3
K	2AS4

site_id	GC8
Number of Residues	29
Details	BINDING SITE FOR CHAIN I OF TSUSHIMYCIN

Chain	Residue
A	CPI3
A	2AS4
A	ASP5
B	EOH3014
F	LNG0
F	ASP7
F	HOH2001
F	CA3014
G	VLL2
H	ASP7
H	GLY8
H	VDL9
I	HOH2002
I	HOH2003
I	HOH2004
I	HOH2005
I	HOH2007
I	HOH2008
I	HOH2009
I	HOH2011
I	HOH2014
I	HOH2015
I	HOH2016
I	CA3013
I	CA3014
J	VDL9
J	VAL10
J	PRO11
K	2AS4

site_id	GC9
Number of Residues	33
Details	BINDING SITE FOR CHAIN K OF TSUSHIMYCIN

Chain	Residue
A	ASP7
A	GLY8
A	VDL9
A	HOH2012
B	LNG0
B	VLL2
B	EOH3020
F	CPI3
F	2AS4
F	ASP5
H	VDL9
H	VAL10
H	PRO11
I	LNG0
I	ASP7
I	CA3014
J	2AS4
K	HOH2001
K	HOH2003
K	HOH2005
K	HOH2006
K	HOH2007
K	HOH2008
K	HOH2010
K	HOH2011
K	HOH2012
K	HOH2013
K	HOH2014
K	EOH3013
K	EOH3014
K	CA3015
K	CA3016
K	CL3017

site_id	HC1
Number of Residues	24
Details	BINDING SITE FOR CHAIN L OF TSUSHIMYCIN

Chain	Residue
B	2AS4
B	EOH3019
C	LNG0
C	ASP1
C	ASP7
C	CA3016
D	ASP7
D	GLY8
D	VDL9
E	VDL9
E	VAL10
E	PRO11
G	CPI3
G	2AS4
G	ASP5
H	HOH2013
H	EOH3014
L	HOH2003
L	HOH2004
L	HOH2006
L	HOH2009
L	HOH2010
L	CA3013
L	CL3014

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)