1W1P
Crystal structure of S. marcescens chitinase B in complex with the cyclic dipeptide inhibitor cyclo-(Gly-L-Pro) at 2.1 A resolution
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000272 | biological_process | polysaccharide catabolic process |
A | 0004553 | molecular_function | hydrolase activity, hydrolyzing O-glycosyl compounds |
A | 0004568 | molecular_function | chitinase activity |
A | 0005576 | cellular_component | extracellular region |
A | 0005975 | biological_process | carbohydrate metabolic process |
A | 0006032 | biological_process | chitin catabolic process |
A | 0008061 | molecular_function | chitin binding |
A | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
A | 0030246 | molecular_function | carbohydrate binding |
B | 0000272 | biological_process | polysaccharide catabolic process |
B | 0004553 | molecular_function | hydrolase activity, hydrolyzing O-glycosyl compounds |
B | 0004568 | molecular_function | chitinase activity |
B | 0005576 | cellular_component | extracellular region |
B | 0005975 | biological_process | carbohydrate metabolic process |
B | 0006032 | biological_process | chitin catabolic process |
B | 0008061 | molecular_function | chitin binding |
B | 0016798 | molecular_function | hydrolase activity, acting on glycosyl bonds |
B | 0030246 | molecular_function | carbohydrate binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE SO4 A1519 |
Chain | Residue |
A | ARG420 |
A | HOH2417 |
A | HOH2418 |
A | HOH2419 |
B | LYS386 |
B | ARG420 |
B | HOH2430 |
site_id | AC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 A1520 |
Chain | Residue |
A | HOH2420 |
A | HOH2421 |
A | HOH2422 |
A | PRO281 |
A | SER282 |
site_id | AC3 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE SO4 B1502 |
Chain | Residue |
B | THR26 |
B | ARG343 |
B | ARG410 |
B | HOH2512 |
B | HOH2514 |
B | HOH2515 |
B | HOH2516 |
site_id | AC4 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE SO4 B1503 |
Chain | Residue |
A | GLU383 |
A | LYS386 |
B | ARG420 |
B | ASP426 |
B | HOH2517 |
B | HOH2518 |
B | HOH2519 |
B | HOH2520 |
site_id | AC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 B1504 |
Chain | Residue |
B | PRO281 |
B | SER282 |
B | HOH2521 |
B | HOH2522 |
B | HOH2523 |
site_id | AC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 B1505 |
Chain | Residue |
A | ASN352 |
B | ALA455 |
B | HOH2046 |
B | HOH2525 |
B | HOH2526 |
site_id | AC7 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE GIO A1518 |
Chain | Residue |
A | TYR10 |
A | PHE51 |
A | GLY96 |
A | TRP97 |
A | ASP142 |
A | GLU144 |
A | MET212 |
A | TYR214 |
A | TRP403 |
A | GOL1514 |
site_id | AC8 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE GIO B1501 |
Chain | Residue |
B | TYR10 |
B | PHE51 |
B | GLY96 |
B | TRP97 |
B | ASP142 |
B | GLU144 |
B | MET212 |
B | TYR214 |
B | TRP403 |
B | HOH2323 |
B | HOH2510 |
site_id | AC9 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE GOL A1499 |
Chain | Residue |
A | TRP479 |
A | TYR481 |
A | ASP489 |
A | ALA491 |
A | HOH2394 |
A | HOH2398 |
B | PHE190 |
B | PHE191 |
B | ARG194 |
site_id | BC1 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE GOL A1500 |
Chain | Residue |
A | HOH2399 |
B | TYR323 |
B | LEU325 |
B | GLY327 |
B | CYS328 |
B | VAL332 |
B | HOH2352 |
B | HOH2355 |
site_id | BC2 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE GOL A1501 |
Chain | Residue |
A | PRO260 |
A | PHE263 |
A | SER264 |
A | ARG439 |
A | TYR440 |
A | THR441 |
A | HOH2218 |
A | HOH2400 |
site_id | BC3 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL A1502 |
Chain | Residue |
A | HOH2401 |
B | PHE263 |
B | SER264 |
B | ARG439 |
B | TYR440 |
B | THR441 |
B | HOH2305 |
site_id | BC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL A1503 |
Chain | Residue |
A | ARG244 |
A | THR256 |
A | PHE259 |
A | PRO260 |
A | SER261 |
B | TRP252 |
site_id | BC5 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL A1504 |
Chain | Residue |
A | ASP207 |
A | LYS284 |
A | ARG162 |
A | ALA204 |
A | LEU206 |
site_id | BC6 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL A1505 |
Chain | Residue |
A | LYS132 |
A | GLN168 |
A | THR171 |
A | HOH2403 |
A | HOH2404 |
A | HOH2405 |
B | LYS115 |
site_id | BC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL A1506 |
Chain | Residue |
A | HOH2406 |
B | ARG162 |
B | ALA204 |
B | ASP207 |
B | LYS284 |
B | HOH2391 |
site_id | BC8 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL A1507 |
Chain | Residue |
A | PHE190 |
A | SER193 |
A | ARG194 |
B | TRP479 |
B | TYR481 |
B | SER484 |
B | ASP489 |
site_id | BC9 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL A1508 |
Chain | Residue |
A | GLY480 |
A | GOL1512 |
A | HOH2398 |
B | PHE190 |
B | GLU221 |
B | PHE239 |
site_id | CC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL A1509 |
Chain | Residue |
A | HOH2410 |
B | GLY188 |
B | MET212 |
B | TYR214 |
B | ASP215 |
B | HOH2211 |
site_id | CC2 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL A1510 |
Chain | Residue |
A | ARG294 |
A | TRP403 |
A | GLN407 |
A | GOL1514 |
A | HOH2411 |
site_id | CC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL A1511 |
Chain | Residue |
A | ASP215 |
A | LEU216 |
A | TRP220 |
A | GLU221 |
A | LEU265 |
B | GOL1500 |
site_id | CC4 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE GOL A1512 |
Chain | Residue |
A | TYR481 |
A | GOL1508 |
B | TRP220 |
site_id | CC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE GOL A1513 |
Chain | Residue |
A | TRP220 |
A | HOH2413 |
A | HOH2414 |
B | TYR481 |
site_id | CC6 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE GOL A1514 |
Chain | Residue |
A | TRP97 |
A | ASP215 |
A | GOL1510 |
A | GIO1518 |
A | HOH2414 |
site_id | CC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE GOL A1515 |
Chain | Residue |
A | LYS115 |
A | PRO117 |
A | ARG120 |
site_id | CC8 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE GOL A1516 |
Chain | Residue |
A | GOL1517 |
A | HOH2415 |
B | THR238 |
site_id | CC9 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL A1517 |
Chain | Residue |
A | GOL1516 |
A | HOH2415 |
B | ALA235 |
B | GLY236 |
B | PRO237 |
B | TYR307 |
site_id | DC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE GOL B1500 |
Chain | Residue |
A | PHE190 |
A | GLU221 |
A | PHE239 |
A | GOL1511 |
B | GLY480 |
B | HOH2509 |
Functional Information from PROSITE/UniProt
site_id | PS01095 |
Number of Residues | 9 |
Details | GH18_1 Glycosyl hydrolases family 18 (GH18) active site signature. FDGVDIDwE |
Chain | Residue | Details |
A | PHE136-GLU144 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1ctn |
Chain | Residue | Details |
A | ASP142 | |
A | TYR214 | |
A | GLU144 |
site_id | CSA2 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1ctn |
Chain | Residue | Details |
B | ASP142 | |
B | TYR214 | |
B | GLU144 |
site_id | CSA3 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1ctn |
Chain | Residue | Details |
A | ASP142 | |
A | GLU144 |
site_id | CSA4 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1ctn |
Chain | Residue | Details |
B | ASP142 | |
B | GLU144 |
site_id | CSA5 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1ctn |
Chain | Residue | Details |
A | ASP140 | |
A | GLU144 |
site_id | CSA6 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1ctn |
Chain | Residue | Details |
B | ASP140 | |
B | GLU144 |