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1VLB

STRUCTURE REFINEMENT OF THE ALDEHYDE OXIDOREDUCTASE FROM DESULFOVIBRIO GIGAS AT 1.28 A

Replaces:  1HLRReplaces:  1ALO
Functional Information from GO Data
ChainGOidnamespacecontents
A0005506molecular_functioniron ion binding
A0016491molecular_functionoxidoreductase activity
A0033727molecular_functionaldehyde dehydrogenase (FAD-independent) activity
A0046872molecular_functionmetal ion binding
A0051536molecular_functioniron-sulfur cluster binding
A0051537molecular_function2 iron, 2 sulfur cluster binding
Functional Information from PDB Data
site_idAC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE CL A 916
ChainResidue
AARG460
ATYR535
AGLN539

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 917
ChainResidue
AASP263
AGLU899
AGLU903
AHOH4178
AHOH4272
AHOH4345

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL A 918
ChainResidue
ATYR892
AARG893
AHOH4194
AHOH5012

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 919
ChainResidue
AHOH4217
AHOH4424
AHOH4801
AHOH4802
AHOH4950
AHOH5038

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE CL A 920
ChainResidue
ALYS248
APRO898
AGLU899
AHOH4410
AHOH4546

site_idAC6
Number of Residues36
DetailsBINDING SITE FOR RESIDUE PCD A 921
ChainResidue
AGLN99
ACYS139
ATHR420
APHE421
AGLY422
AALA531
APHE532
AARG533
ATRP650
AHIS653
AGLY654
AGLN655
AGLY656
AGLY660
ASER695
AGLY696
AGLY697
ASER698
AARG699
AGLN700
AGLN701
ALEU795
ASER797
ACYS799
AASN800
ATHR804
AGLN807
AALA864
ASER865
AGLY866
AVAL867
AGLY868
AGLU869
AIPA914
AHOH4127
AHOH4395

site_idAC7
Number of Residues8
DetailsBINDING SITE FOR RESIDUE FES A 908
ChainResidue
AGLN99
ACYS100
AGLY101
ACYS103
ACYS137
AARG138
ACYS139
AILE368

site_idAC8
Number of Residues10
DetailsBINDING SITE FOR RESIDUE FES A 909
ChainResidue
AGLY39
ACYS40
AGLU41
AGLY43
AGLN44
ACYS45
AGLY46
ACYS48
AARG58
ACYS60

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE IPA A 914
ChainResidue
AALA531
ATYR535
AGLY697
APCD921
AHOH4375

site_idBC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE IPA A 915
ChainResidue
AVAL5
AGLU12
AASN14
APRO416
ATRP683
AHOH4047

Functional Information from PROSITE/UniProt
site_idPS00197
Number of Residues9
Details2FE2S_FER_1 2Fe-2S ferredoxin-type iron-sulfur binding region signature. CEQGQCGAC
ChainResidueDetails
ACYS40-CYS48

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:7502041
ChainResidueDetails
ACYS40
ACYS45
ACYS48
ACYS60
ACYS100
ACYS103
ACYS137
ACYS139

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING:
ChainResidueDetails
AHIS653
AGLU869

Catalytic Information from CSA
site_idCSA1
Number of Residues1
Detailsa catalytic site defined by CSA, PubMed 8799115, 9242907
ChainResidueDetails
AGLU869

site_idMCSA1
Number of Residues1
DetailsM-CSA 105
ChainResidueDetails
AGLU869covalently attached, hydrogen bond acceptor, hydrogen bond donor, metal ligand, nucleofuge, nucleophile, proton acceptor, proton donor

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PDB entries from 2024-09-11

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