Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1VGO

Crystal Structure of Archaerhodopsin-2

Functional Information from GO Data
ChainGOidnamespacecontents
A0005216molecular_functionmonoatomic ion channel activity
A0005886cellular_componentplasma membrane
A0006811biological_processmonoatomic ion transport
A0007602biological_processphototransduction
A0009881molecular_functionphotoreceptor activity
A0016020cellular_componentmembrane
A1902600biological_processproton transmembrane transport
B0005216molecular_functionmonoatomic ion channel activity
B0005886cellular_componentplasma membrane
B0006811biological_processmonoatomic ion transport
B0007602biological_processphototransduction
B0009881molecular_functionphotoreceptor activity
B0016020cellular_componentmembrane
B1902600biological_processproton transmembrane transport
Functional Information from PROSITE/UniProt
site_idPS00327
Number of Residues12
DetailsBACTERIAL_OPSIN_RET Bacterial rhodopsins retinal binding site. FMVLDVtAKvGF
ChainResidueDetails
APHE213-PHE224

site_idPS00950
Number of Residues13
DetailsBACTERIAL_OPSIN_1 Bacterial rhodopsins signature 1. RYaDWlFTTPLLL
ChainResidueDetails
AARG87-LEU99

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues78
DetailsTOPO_DOM: Extracellular => ECO:0000250
ChainResidueDetails
AGLN1-PRO12
APHE66-TYR84
ASER133-PRO136
ATHR198-GLY205
BGLN1-PRO12
BPHE66-TYR84
BSER133-PRO136
BTHR198-GLY205

site_idSWS_FT_FI2
Number of Residues42
DetailsTRANSMEM: Helical; Name=Helix A => ECO:0000250
ChainResidueDetails
AGLU13-ARG34
BGLU13-ARG34

site_idSWS_FT_FI3
Number of Residues52
DetailsTOPO_DOM: Cytoplasmic => ECO:0000250
ChainResidueDetails
AGLY35-ALA43
ALYS107-ASP109
AALA166-ARG168
AGLU239-ASP253
BGLY35-ALA43
BLYS107-ASP109
BALA166-ARG168
BGLU239-ASP253

site_idSWS_FT_FI4
Number of Residues42
DetailsTRANSMEM: Helical; Name=Helix B => ECO:0000250
ChainResidueDetails
AARG44-PHE65
BARG44-PHE65

site_idSWS_FT_FI5
Number of Residues42
DetailsTRANSMEM: Helical; Name=Helix C => ECO:0000250
ChainResidueDetails
ATYR85-ALA106
BTYR85-ALA106

site_idSWS_FT_FI6
Number of Residues44
DetailsTRANSMEM: Helical; Name=Helix D => ECO:0000250
ChainResidueDetails
AARG110-LEU132
BARG110-LEU132

site_idSWS_FT_FI7
Number of Residues56
DetailsTRANSMEM: Helical; Name=Helix E => ECO:0000250
ChainResidueDetails
ALEU137-ALA165
BLEU137-ALA165

site_idSWS_FT_FI8
Number of Residues56
DetailsTRANSMEM: Helical; Name=Helix F => ECO:0000250
ChainResidueDetails
ASER169-GLY197
BSER169-GLY197

site_idSWS_FT_FI9
Number of Residues64
DetailsTRANSMEM: Helical; Name=Helix G => ECO:0000250
ChainResidueDetails
ALEU206-THR238
BLEU206-THR238

site_idSWS_FT_FI10
Number of Residues2
DetailsMOD_RES: Pyrrolidone carboxylic acid => ECO:0000250
ChainResidueDetails
AGLN1
BGLN1

site_idSWS_FT_FI11
Number of Residues2
DetailsMOD_RES: N6-(retinylidene)lysine => ECO:0000250
ChainResidueDetails
ALYS221
BLYS221

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon