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1VEZ

Crystal Structure of Peptide Deformylase from Leptospira Interrogans(LiPDF) at pH8.0

Functional Information from GO Data
ChainGOidnamespacecontents
A0006412biological_processtranslation
A0016787molecular_functionhydrolase activity
A0042586molecular_functionpeptide deformylase activity
A0043686biological_processco-translational protein modification
A0046872molecular_functionmetal ion binding
B0006412biological_processtranslation
B0016787molecular_functionhydrolase activity
B0042586molecular_functionpeptide deformylase activity
B0043686biological_processco-translational protein modification
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN A 1513
ChainResidue
AGLN53
ACYS101
AHIS143
AHIS147
AFMT719

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ZN B 2513
ChainResidue
BFMT725
BGLN53
BCYS101
BHIS143
BHIS147

site_idAC3
Number of Residues10
DetailsBINDING SITE FOR RESIDUE TRS A 801
ChainResidue
AARG70
ACYS101
AVAL104
APRO105
AGLY106
AMET107
AARG108
AASN166
AHOH1514
AHOH1618

site_idAC4
Number of Residues11
DetailsBINDING SITE FOR RESIDUE TRS A 802
ChainResidue
AARG118
AGLN120
AHOH1623
BASN84
BVAL86
BGLN120
BTRP121
BMET122
BGLN128
BFMT727
BHOH2545

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE TRS A 804
ChainResidue
AASN84
AVAL86
AGLN120
ATRP121
AGLN128
AHOH1604
AHOH1629
BARG118

site_idAC6
Number of Residues1
DetailsBINDING SITE FOR RESIDUE FMT A 717
ChainResidue
ATRP98

site_idAC7
Number of Residues9
DetailsBINDING SITE FOR RESIDUE FMT A 719
ChainResidue
AGLY48
AGLN53
ACYS101
ALEU102
AHIS143
AGLU144
AHIS147
AFMT720
AZN1513

site_idAC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FMT A 720
ChainResidue
AGLY46
AVAL47
AARG70
ATYR71
AGLY100
ACYS101
AFMT719

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT B 721
ChainResidue
AARG42
BARG80
BLYS137
BTYR141
BHOH2582

site_idBC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE FMT B 723
ChainResidue
BTRP98
BHOH2600

site_idBC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE FMT B 724
ChainResidue
BGLY55
BILE56
BLEU57

site_idBC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE FMT B 725
ChainResidue
BGLY48
BGLN53
BLEU102
BHIS143
BGLU144
BHIS147
BFMT726
BZN2513

site_idBC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FMT B 726
ChainResidue
BGLY46
BVAL47
BARG70
BTYR71
BGLY100
BCYS101
BFMT725

site_idBC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FMT B 727
ChainResidue
ATHR88
AARG118
ATRS802
AHOH1561
BGLN59
BVAL86

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: ACT_SITE => ECO:0000250
ChainResidueDetails
AGLU144
BGLU144

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
ACYS101
AHIS143
AHIS147
BCYS101
BHIS143
BHIS147

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 1bs4
ChainResidueDetails
ALEU102
AGLY48
AGLN53
AGLU144

site_idCSA2
Number of Residues4
DetailsAnnotated By Reference To The Literature 1bs4
ChainResidueDetails
BLEU102
BGLY48
BGLN53
BGLU144

223166

PDB entries from 2024-07-31

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