1VCL
Crystal Structure of Hemolytic Lectin CEL-III
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000287 | molecular_function | magnesium ion binding |
A | 0001906 | biological_process | cell killing |
A | 0004653 | molecular_function | polypeptide N-acetylgalactosaminyltransferase activity |
A | 0005509 | molecular_function | calcium ion binding |
A | 0005534 | molecular_function | galactose binding |
A | 0005576 | cellular_component | extracellular region |
A | 0005615 | cellular_component | extracellular space |
A | 0005794 | cellular_component | Golgi apparatus |
A | 0006493 | biological_process | protein O-linked glycosylation |
A | 0019731 | biological_process | antibacterial humoral response |
A | 0030246 | molecular_function | carbohydrate binding |
A | 0030395 | molecular_function | lactose binding |
A | 0031640 | biological_process | killing of cells of another organism |
A | 0034120 | biological_process | positive regulation of erythrocyte aggregation |
A | 0042742 | biological_process | defense response to bacterium |
A | 0042806 | molecular_function | fucose binding |
A | 0044179 | biological_process | hemolysis in another organism |
A | 0046871 | molecular_function | N-acetylgalactosamine binding |
A | 0046872 | molecular_function | metal ion binding |
A | 0050829 | biological_process | defense response to Gram-negative bacterium |
A | 0050830 | biological_process | defense response to Gram-positive bacterium |
A | 0051260 | biological_process | protein homooligomerization |
A | 0051673 | biological_process | disruption of plasma membrane integrity in another organism |
A | 1903777 | molecular_function | melibiose binding |
B | 0000287 | molecular_function | magnesium ion binding |
B | 0001906 | biological_process | cell killing |
B | 0004653 | molecular_function | polypeptide N-acetylgalactosaminyltransferase activity |
B | 0005509 | molecular_function | calcium ion binding |
B | 0005534 | molecular_function | galactose binding |
B | 0005576 | cellular_component | extracellular region |
B | 0005615 | cellular_component | extracellular space |
B | 0005794 | cellular_component | Golgi apparatus |
B | 0006493 | biological_process | protein O-linked glycosylation |
B | 0019731 | biological_process | antibacterial humoral response |
B | 0030246 | molecular_function | carbohydrate binding |
B | 0030395 | molecular_function | lactose binding |
B | 0031640 | biological_process | killing of cells of another organism |
B | 0034120 | biological_process | positive regulation of erythrocyte aggregation |
B | 0042742 | biological_process | defense response to bacterium |
B | 0042806 | molecular_function | fucose binding |
B | 0044179 | biological_process | hemolysis in another organism |
B | 0046871 | molecular_function | N-acetylgalactosamine binding |
B | 0046872 | molecular_function | metal ion binding |
B | 0050829 | biological_process | defense response to Gram-negative bacterium |
B | 0050830 | biological_process | defense response to Gram-positive bacterium |
B | 0051260 | biological_process | protein homooligomerization |
B | 0051673 | biological_process | disruption of plasma membrane integrity in another organism |
B | 1903777 | molecular_function | melibiose binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE CA A 1001 |
Chain | Residue |
A | ASP23 |
A | ILE24 |
A | GLY26 |
A | ASP43 |
A | HOH1337 |
A | HOH1550 |
A | HOH1681 |
site_id | AC2 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE CA A 1002 |
Chain | Residue |
A | GLY124 |
A | ASP141 |
A | HOH1559 |
A | HOH1652 |
A | HOH1664 |
A | ASP121 |
A | ILE122 |
site_id | AC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA A 1003 |
Chain | Residue |
A | ASP168 |
A | VAL169 |
A | GLY171 |
A | ASP188 |
A | HOH1587 |
A | HOH1710 |
site_id | AC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA A 1004 |
Chain | Residue |
A | ASP209 |
A | VAL210 |
A | GLY212 |
A | ASP229 |
A | HOH1704 |
A | HOH1709 |
site_id | AC5 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE CA A 1005 |
Chain | Residue |
A | ASP256 |
A | VAL257 |
A | GLY259 |
A | ASP276 |
A | HOH1363 |
A | HOH1379 |
A | HOH1437 |
site_id | AC6 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG A 1101 |
Chain | Residue |
A | ASN32 |
A | ILE33 |
A | ASN72 |
A | VAL73 |
A | ILE131 |
A | HOH1390 |
site_id | AC7 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG A 1102 |
Chain | Residue |
A | ASN177 |
A | VAL178 |
A | ASN218 |
A | VAL219 |
A | ASP265 |
A | VAL266 |
site_id | AC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA B 1001 |
Chain | Residue |
B | ASP23 |
B | ILE24 |
B | GLY26 |
B | ASP43 |
B | HOH2606 |
B | HOH2608 |
site_id | AC9 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA B 1002 |
Chain | Residue |
B | ASP121 |
B | ILE122 |
B | GLY124 |
B | ASP141 |
B | HOH2584 |
B | HOH2588 |
site_id | BC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA B 1003 |
Chain | Residue |
B | ASP168 |
B | VAL169 |
B | GLY171 |
B | ASP188 |
B | HOH2605 |
B | HOH2617 |
site_id | BC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE CA B 1004 |
Chain | Residue |
B | ASP209 |
B | VAL210 |
B | GLY212 |
B | ASP229 |
B | HOH2604 |
B | HOH2616 |
site_id | BC3 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE CA B 1005 |
Chain | Residue |
B | ASP256 |
B | VAL257 |
B | GLY259 |
B | ASP276 |
B | HOH2225 |
B | HOH2264 |
B | HOH2340 |
site_id | BC4 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG B 1101 |
Chain | Residue |
B | ASN32 |
B | ILE33 |
B | ASN72 |
B | VAL73 |
B | ILE131 |
B | HOH2607 |
site_id | BC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE MG B 1102 |
Chain | Residue |
B | ASN177 |
B | VAL178 |
B | ASN218 |
B | VAL219 |
B | ASP265 |
B | VAL266 |
site_id | BC6 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CL A 1201 |
Chain | Residue |
A | GLY212 |
A | SER213 |
A | ASP214 |
A | LYS338 |
site_id | BC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE CL B 2201 |
Chain | Residue |
B | GLY212 |
B | SER213 |
B | ASP214 |
B | LYS338 |
site_id | BC8 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE BTB A 1301 |
Chain | Residue |
A | ALA352 |
A | ASN355 |
A | SER356 |
A | GLN402 |
A | HOH1381 |
A | HOH1516 |
A | CYS4 |
A | PRO7 |
A | GLU57 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | BINDING: BINDING => ECO:0000269|PubMed:17977832, ECO:0007744|PDB:2Z48 |
Chain | Residue | Details |
A | ASP9 | |
A | VAL107 | |
B | ASP9 | |
B | VAL107 |
site_id | SWS_FT_FI2 |
Number of Residues | 60 |
Details | BINDING: BINDING => ECO:0000269|PubMed:15194688, ECO:0000269|PubMed:17977832, ECO:0000269|PubMed:24652284, ECO:0007744|PDB:1VCL, ECO:0007744|PDB:2Z48, ECO:0007744|PDB:2Z49, ECO:0007744|PDB:3W9T |
Chain | Residue | Details |
A | ASP23 | |
A | ILE122 | |
A | GLY124 | |
A | ILE131 | |
A | ASP141 | |
A | ASP168 | |
A | VAL169 | |
A | GLY171 | |
A | ASN177 | |
A | VAL178 | |
A | ASP188 | |
A | ILE24 | |
A | ASP209 | |
A | VAL210 | |
A | GLY212 | |
A | ASN218 | |
A | VAL219 | |
A | ASP229 | |
A | ASP256 | |
A | VAL257 | |
A | GLY259 | |
A | ASP265 | |
A | GLY26 | |
A | VAL266 | |
B | ASP23 | |
B | ILE24 | |
B | GLY26 | |
B | ASN32 | |
B | ILE33 | |
B | ASP43 | |
B | ASN72 | |
B | VAL73 | |
B | ASP121 | |
A | ASN32 | |
B | ILE122 | |
B | GLY124 | |
B | ILE131 | |
B | ASP141 | |
B | ASP168 | |
B | VAL169 | |
B | GLY171 | |
B | ASN177 | |
B | VAL178 | |
B | ASP188 | |
A | ILE33 | |
B | ASP209 | |
B | VAL210 | |
B | GLY212 | |
B | ASN218 | |
B | VAL219 | |
B | ASP229 | |
B | ASP256 | |
B | VAL257 | |
B | GLY259 | |
B | ASP265 | |
A | ASP43 | |
B | VAL266 | |
A | ASN72 | |
A | VAL73 | |
A | ASP121 |
site_id | SWS_FT_FI3 |
Number of Residues | 6 |
Details | BINDING: BINDING => ECO:0000269|PubMed:17977832, ECO:0000269|PubMed:24652284, ECO:0007744|PDB:2Z48, ECO:0007744|PDB:2Z49, ECO:0007744|PDB:3W9T |
Chain | Residue | Details |
A | ASP39 | |
A | TRP269 | |
A | ASP276 | |
B | ASP39 | |
B | TRP269 | |
B | ASP276 |
site_id | SWS_FT_FI4 |
Number of Residues | 6 |
Details | BINDING: BINDING => ECO:0000269|PubMed:17977832, ECO:0000269|PubMed:24652284, ECO:0007744|PDB:2Z49, ECO:0007744|PDB:3W9T |
Chain | Residue | Details |
A | TYR134 | |
A | TYR181 | |
A | TYR222 | |
B | TYR134 | |
B | TYR181 | |
B | TYR222 |
site_id | SWS_FT_FI5 |
Number of Residues | 2 |
Details | MOD_RES: Pyrrolidone carboxylic acid => ECO:0000269|PubMed:10561549, ECO:0000269|PubMed:15194688 |
Chain | Residue | Details |
A | PCA1 | |
B | PCA1 |