1V9H
Crystal structure of the RNase MC1 mutant Y101A in complex with 5'-UMP
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003723 | molecular_function | RNA binding |
A | 0004518 | molecular_function | nuclease activity |
A | 0004519 | molecular_function | endonuclease activity |
A | 0004521 | molecular_function | RNA endonuclease activity |
A | 0005576 | cellular_component | extracellular region |
A | 0006401 | biological_process | RNA catabolic process |
A | 0016787 | molecular_function | hydrolase activity |
A | 0016829 | molecular_function | lyase activity |
A | 0033897 | molecular_function | ribonuclease T2 activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 9 |
Details | BINDING SITE FOR RESIDUE SO4 A 301 |
Chain | Residue |
A | PRO52 |
A | PHE53 |
A | THR86 |
A | ARG132 |
A | GLY185 |
A | ALA186 |
A | HOH1030 |
A | HOH1043 |
A | HOH1068 |
site_id | AC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE SO4 A 302 |
Chain | Residue |
A | GLY35 |
A | LEU36 |
A | TRP69 |
A | GLU84 |
A | TRP85 |
A | GLY89 |
site_id | AC3 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 A 303 |
Chain | Residue |
A | ASN47 |
A | HIS83 |
A | LYS87 |
A | HOH1083 |
site_id | AC4 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE U5P A 1001 |
Chain | Residue |
A | GLN9 |
A | HIS34 |
A | ASN71 |
A | VAL72 |
A | LEU73 |
A | ARG74 |
A | PHE80 |
A | HIS83 |
A | GLU84 |
A | LYS87 |
A | HIS88 |
A | HOH1039 |
A | HOH1050 |
A | HOH1055 |
A | HOH1077 |
Functional Information from PROSITE/UniProt
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 1 |
Details | Signal: {"evidences":[{"evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI2 |
Number of Residues | 1 |
Details | Active site: {"description":"Proton donor","evidences":[{"source":"PROSITE-ProRule","id":"PRU10045","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"12731868","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15322360","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"10446375","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"1J1F","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1J1G","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1UCD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1V9H","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI3 |
Number of Residues | 1 |
Details | Active site: {"evidences":[{"source":"PubMed","id":"10964705","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"12731868","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15322360","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"10446375","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"1J1F","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1J1G","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1UCA","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1UCD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1V9H","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI4 |
Number of Residues | 1 |
Details | Active site: {"description":"Proton acceptor","evidences":[{"source":"PROSITE-ProRule","id":"PRU10045","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"12731868","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15322360","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"10446375","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"1J1F","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1J1G","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1UCD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1V9H","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI5 |
Number of Residues | 3 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"10964705","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"12731868","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"15322360","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"1J1F","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1J1G","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1UCA","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1UCC","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1UCD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1V9H","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI6 |
Number of Residues | 1 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"12731868","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15322360","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1J1F","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1J1G","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1UCD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1V9H","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI7 |
Number of Residues | 1 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"15322360","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"12731868","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"1J1F","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1J1G","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1V9H","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI8 |
Number of Residues | 1 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"15322360","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"10964705","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"12731868","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"1J1G","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1UCA","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1UCD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1V9H","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI9 |
Number of Residues | 1 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"10964705","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"12731868","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"15322360","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"1J1F","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1J1G","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1UCA","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1UCD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1V9H","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI10 |
Number of Residues | 9 |
Details | Site: {"description":"Involved in thermostability","evidences":[{"source":"PubMed","id":"15322360","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1bol |
Chain | Residue | Details |
A | HIS34 | |
A | GLU84 | |
A | HIS88 |