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1UU9

Structure of human PDK1 kinase domain in complex with BIM-3

Functional Information from GO Data
ChainGOidnamespacecontents
A0004672molecular_functionprotein kinase activity
A0004674molecular_functionprotein serine/threonine kinase activity
A0005524molecular_functionATP binding
A0006468biological_processprotein phosphorylation
Functional Information from PDB Data
site_idAC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A1365
ChainResidue
ALYS76
AARG131
ATHR148
AGLN150
AHOH2058

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A1366
ChainResidue
AGOL1364
AHOH2132
AHOH2225
ALYS144
ATYR146
ASER160
AGLN220

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A1367
ChainResidue
AARG106
ALYS144
AHIS351
AGOL1364
AHOH2226

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A1368
ChainResidue
AGLY91
ASER92
APHE93
ASER94
AGOL1358
AGOL1363
AHOH2227

site_idAC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A1369
ChainResidue
AARG75
AARG136
ALYS199

site_idAC6
Number of Residues17
DetailsBINDING SITE FOR RESIDUE BI3 A1370
ChainResidue
ALEU88
AGLY89
AALA109
ALYS111
AVAL143
ALEU159
ASER160
ATYR161
AALA162
AGLU166
AGLU209
AASN210
ALEU212
ATHR222
AASP223
AGOL1363
AHOH2223

site_idAC7
Number of Residues10
DetailsBINDING SITE FOR RESIDUE GOL A1357
ChainResidue
AALA103
ATHR104
ASER105
AHIS139
ASER191
ATRP347
AGLU348
AASN349
ALEU350
AHIS351

site_idAC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE GOL A1358
ChainResidue
ALYS111
ALEU113
ATYR126
AGLU130
AGLY225
AGOL1363
ASO41368

site_idAC9
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A1359
ChainResidue
APRO79
ALYS154
ATYR156
AGLU331
AGLY332

site_idBC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE GOL A1360
ChainResidue
ALYS83
AVAL345
ATHR346
ATRP347
AGLU348

site_idBC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE GOL A1361
ChainResidue
ALEU297
ATYR299
APHE301

site_idBC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A1362
ChainResidue
APHE82
ALYS83
APHE84
AGLU194
AGLY334
ALYS337
AHOH2221
AHOH2222

site_idBC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE GOL A1363
ChainResidue
AGLY91
ASER94
AVAL96
ALYS111
AGOL1358
ASO41368
ABI31370
AHOH2223
AHOH2227

site_idBC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GOL A1364
ChainResidue
AARG106
AGLU107
ASER160
ATYR161
ASO41366
ASO41367
AHOH2083
AHOH2224

Functional Information from PROSITE/UniProt
site_idPS00107
Number of Residues24
DetailsPROTEIN_KINASE_ATP Protein kinases ATP-binding region signature. LGEGSFSTVVlArelatsre..........YAIK
ChainResidueDetails
ALEU88-LYS111

site_idPS00108
Number of Residues13
DetailsPROTEIN_KINASE_ST Serine/Threonine protein kinases active-site signature. IiHrDLKpeNILL
ChainResidueDetails
AILE201-LEU213

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton acceptor => ECO:0000255|PROSITE-ProRule:PRU00159, ECO:0000255|PROSITE-ProRule:PRU10027
ChainResidueDetails
ATHR255

site_idSWS_FT_FI2
Number of Residues5
DetailsBINDING: BINDING => ECO:0000269|PubMed:12169624, ECO:0000269|PubMed:15741170, ECO:0000269|PubMed:22999883
ChainResidueDetails
APHE142
ATYR161
AASN210
AASP216
ATYR273

site_idSWS_FT_FI3
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:22999883
ChainResidueDetails
AALA259

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0000269|PubMed:10455013
ChainResidueDetails
AARG75

site_idSWS_FT_FI5
Number of Residues1
DetailsMOD_RES: Phosphoserine; by autocatalysis => ECO:0000269|PubMed:10455013, ECO:0000269|PubMed:11481331, ECO:0000269|PubMed:15772071, ECO:0000269|PubMed:16780920, ECO:0000269|Ref.8
ChainResidueDetails
APHE291

site_idSWS_FT_FI6
Number of Residues1
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:Q9Z2A0
ChainResidueDetails
ATHR354

217705

PDB entries from 2024-03-27

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