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1UBX

STRUCTURE OF FARNESYL PYROPHOSPHATE SYNTHETASE

Functional Information from GO Data
ChainGOidnamespacecontents
A0004161molecular_functiondimethylallyltranstransferase activity
A0004337molecular_functiongeranyltranstransferase activity
A0005737cellular_componentcytoplasm
A0006695biological_processcholesterol biosynthetic process
A0008299biological_processisoprenoid biosynthetic process
A0016740molecular_functiontransferase activity
A0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
A0033384biological_processgeranyl diphosphate biosynthetic process
A0045337biological_processfarnesyl diphosphate biosynthetic process
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MG A 402
ChainResidue
AASP117
AASP121
ASER123
AFPP401

site_idAC2
Number of Residues12
DetailsBINDING SITE FOR RESIDUE FPP A 401
ChainResidue
AASP121
AARG126
AASN144
AGLU182
AGLN185
ALYS214
AMG402
APHE109
ASER113
AALA116
AASP117
AMET120

Functional Information from PROSITE/UniProt
site_idPS00444
Number of Residues13
DetailsPOLYPRENYL_SYNTHASE_2 Polyprenyl synthases signature 2. MGeyFQIqDDYlD
ChainResidueDetails
AMET249-ASP261

site_idPS00723
Number of Residues15
DetailsPOLYPRENYL_SYNTHASE_1 Polyprenyl synthases signature 1. LVaDDim..DqsltRRG
ChainResidueDetails
ALEU114-GLY128

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P14324
ChainResidueDetails
AGLN110
AARG127
ALYS71
AARG74

site_idSWS_FT_FI2
Number of Residues5
DetailsBINDING:
ChainResidueDetails
ALYS280
AASP117
AASP121
AARG126
ALYS214

site_idSWS_FT_FI3
Number of Residues3
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
ATHR215
AGLN254
ALYS271

site_idSWS_FT_FI4
Number of Residues2
DetailsSITE: Important for determining product chain length
ChainResidueDetails
AALA112
ASER113

Catalytic Information from CSA
site_idMCSA1
Number of Residues10
DetailsM-CSA 253
ChainResidueDetails
ALYS71electrostatic stabiliser
AALA112steric role
AASP117metal ligand
AASP121metal ligand
AARG126electrostatic stabiliser
AASP188electrostatic stabiliser
ALYS214electrostatic stabiliser
APHE253steric role
AASP257metal ligand
AASP258activator

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PDB entries from 2024-06-12

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