1UB8

Crystal structure of d(GCGAAGC), bending duplex with a bulge-in residue

Functional Information from PDB Data

site_id	AC1
Number of Residues	8
Details	BINDING SITE FOR RESIDUE NCO D 400

Chain	Residue
A	DA5
A	DG6
A	HOH1430
B	HOH11
B	HOH37
D	DC7
D	HOH10
D	HOH393

---

site_id	AC2
Number of Residues	8
Details	BINDING SITE FOR RESIDUE NCO A 1401

Chain	Residue
A	DG3
A	HOH1405
A	HOH1433
A	HOH1443
A	HOH1456
B	DG3
D	DA5
A	DC2

---

site_id	AC3
Number of Residues	12
Details	BINDING SITE FOR RESIDUE NCO D 402

Chain	Residue
A	DG3
C	DG1
C	DC2
D	DA5
D	DG6
D	DC7
D	HOH59
D	HOH65
D	HOH68
D	HOH159
D	HOH209
D	HOH377

---

site_id	AC4
Number of Residues	11
Details	BINDING SITE FOR RESIDUE NCO E 403

Chain	Residue
B	DG3
B	HOH224
E	DA5
E	DG6
E	DC7
E	HOH39
E	HOH87
E	HOH93
E	HOH94
F	DG1
F	HOH110

---

site_id	AC5
Number of Residues	11
Details	BINDING SITE FOR RESIDUE NCO B 404

Chain	Residue
A	HOH1406
B	DA5
B	DG6
B	DC7
B	HOH27
B	HOH30
B	HOH36
B	HOH157
E	DC7
E	HOH89
E	HOH129

---

site_id	AC6
Number of Residues	7
Details	BINDING SITE FOR RESIDUE NCO F 405

Chain	Residue
E	DG1
E	HOH395
F	DA5
F	DG6
F	DC7
F	HOH187
F	HOH268

---

site_id	AC7
Number of Residues	7
Details	BINDING SITE FOR RESIDUE NCO B 406

Chain	Residue
B	DA5
B	HOH303
E	DC2
E	DG3
E	HOH234
F	DG3
F	HOH394

---

site_id	AC8
Number of Residues	5
Details	BINDING SITE FOR RESIDUE NCO C 407

Chain	Residue
A	HOH1465
C	DA5
C	DG6
C	HOH174
D	DG1

---

site_id	AC9
Number of Residues	5
Details	BINDING SITE FOR RESIDUE NCO C 408

Chain	Residue
A	DA5
C	DC2
C	DG3
C	HOH291
D	DG3

---