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1TZZ

Crystal structure of the protein L1841, unknown member of enolase superfamily from Bradyrhizobium japonicum

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003824molecular_functioncatalytic activity
A0016829molecular_functionlyase activity
A0016836molecular_functionhydro-lyase activity
A0034194biological_processD-galactonate catabolic process
A0046872molecular_functionmetal ion binding
A0047808molecular_functionD(-)-tartrate dehydratase activity
A0051260biological_processprotein homooligomerization
B0000287molecular_functionmagnesium ion binding
B0003824molecular_functioncatalytic activity
B0016829molecular_functionlyase activity
B0016836molecular_functionhydro-lyase activity
B0034194biological_processD-galactonate catabolic process
B0046872molecular_functionmetal ion binding
B0047808molecular_functionD(-)-tartrate dehydratase activity
B0051260biological_processprotein homooligomerization
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG A 3501
ChainResidue
AASP1216
AGLU1242
AGLU1268
AHOH3322
AHOH3323
AHOH3324

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MG B 3502
ChainResidue
BHOH3002
BHOH3172
BHOH3321
BASP2216
BGLU2242
BGLU2268

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"description":"acceptor","evidences":[{"source":"PubMed","id":"17144653","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsActive site: {"description":"Proton donor/acceptor","evidences":[{"source":"PubMed","id":"17144653","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues26
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"17144653","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues6
DetailsSite: {"description":"Transition state stabilizer"}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues2
DetailsSite: {"description":"Increases basicity of active site His"}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues5
DetailsAnnotated By Reference To The Literature 1ec9
ChainResidueDetails
AHIS1325
AASP1348
AASP1295
ALYS1185
ALYS1187

site_idCSA2
Number of Residues5
DetailsAnnotated By Reference To The Literature 1ec9
ChainResidueDetails
BLYS2185
BLYS2187
BASP2295
BHIS2325
BASP2348

site_idCSA3
Number of Residues3
DetailsAnnotated By Reference To The Literature 1ec9
ChainResidueDetails
AGLU1344
ALYS1185
ALYS1187

site_idCSA4
Number of Residues3
DetailsAnnotated By Reference To The Literature 1ec9
ChainResidueDetails
BLYS2185
BLYS2187
BGLU2344

site_idMCSA1
Number of Residues9
DetailsM-CSA 463
ChainResidueDetails
AASN1058electrostatic stabiliser
ALYS1185electrostatic stabiliser
ALYS1187proton acceptor, proton donor
AASP1216metal ligand
AGLU1242metal ligand
AGLU1268metal ligand
AASP1295electrostatic stabiliser, increase basicity, modifies pKa
AHIS1325proton acceptor, proton donor
AGLU1344electrostatic stabiliser

site_idMCSA2
Number of Residues9
DetailsM-CSA 463
ChainResidueDetails
BASN2058electrostatic stabiliser
BLYS2185electrostatic stabiliser
BLYS2187proton acceptor, proton donor
BASP2216metal ligand
BGLU2242metal ligand
BGLU2268metal ligand
BASP2295electrostatic stabiliser, increase basicity, modifies pKa
BHIS2325proton acceptor, proton donor
BGLU2344electrostatic stabiliser

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PDB entries from 2025-07-09

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