Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

1TNZ

Rat Protein Geranylgeranyltransferase Type-I Complexed with a GGPP analog and a RRCVLL Peptide Derived from Cdc42 splice isoform-2

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0004659	molecular_function	prenyltransferase activity
A	0004660	molecular_function	protein farnesyltransferase activity
A	0004661	molecular_function	protein geranylgeranyltransferase activity
A	0004662	molecular_function	CAAX-protein geranylgeranyltransferase activity
A	0004663	molecular_function	Rab geranylgeranyltransferase activity
A	0005515	molecular_function	protein binding
A	0005737	cellular_component	cytoplasm
A	0005875	cellular_component	microtubule associated complex
A	0005953	cellular_component	CAAX-protein geranylgeranyltransferase complex
A	0005965	cellular_component	protein farnesyltransferase complex
A	0007167	biological_process	enzyme-linked receptor protein signaling pathway
A	0008017	molecular_function	microtubule binding
A	0008270	molecular_function	zinc ion binding
A	0008284	biological_process	positive regulation of cell population proliferation
A	0008318	molecular_function	protein prenyltransferase activity
A	0014070	biological_process	response to organic cyclic compound
A	0018342	biological_process	protein prenylation
A	0018343	biological_process	protein farnesylation
A	0018344	biological_process	protein geranylgeranylation
A	0030971	molecular_function	receptor tyrosine kinase binding
A	0034097	biological_process	response to cytokine
A	0035022	biological_process	positive regulation of Rac protein signal transduction
A	0036094	molecular_function	small molecule binding
A	0042277	molecular_function	peptide binding
A	0043014	molecular_function	alpha-tubulin binding
A	0043066	biological_process	negative regulation of apoptotic process
A	0045787	biological_process	positive regulation of cell cycle
A	0051770	biological_process	positive regulation of nitric-oxide synthase biosynthetic process
A	0051771	biological_process	negative regulation of nitric-oxide synthase biosynthetic process
A	0060090	molecular_function	molecular adaptor activity
A	0090044	biological_process	positive regulation of tubulin deacetylation
A	1901363	molecular_function	heterocyclic compound binding
A	1904395	biological_process	positive regulation of skeletal muscle acetylcholine-gated channel clustering
B	0003824	molecular_function	catalytic activity
B	0004659	molecular_function	prenyltransferase activity
B	0004661	molecular_function	protein geranylgeranyltransferase activity
B	0004662	molecular_function	CAAX-protein geranylgeranyltransferase activity
B	0005515	molecular_function	protein binding
B	0005953	cellular_component	CAAX-protein geranylgeranyltransferase complex
B	0008270	molecular_function	zinc ion binding
B	0008284	biological_process	positive regulation of cell population proliferation
B	0008318	molecular_function	protein prenyltransferase activity
B	0018344	biological_process	protein geranylgeranylation
B	0034097	biological_process	response to cytokine
B	0036094	molecular_function	small molecule binding
B	0042277	molecular_function	peptide binding
B	0045787	biological_process	positive regulation of cell cycle
B	0046872	molecular_function	metal ion binding
B	0051771	biological_process	negative regulation of nitric-oxide synthase biosynthetic process
B	1901363	molecular_function	heterocyclic compound binding
C	0004659	molecular_function	prenyltransferase activity
C	0004660	molecular_function	protein farnesyltransferase activity
C	0004661	molecular_function	protein geranylgeranyltransferase activity
C	0004662	molecular_function	CAAX-protein geranylgeranyltransferase activity
C	0004663	molecular_function	Rab geranylgeranyltransferase activity
C	0005515	molecular_function	protein binding
C	0005737	cellular_component	cytoplasm
C	0005875	cellular_component	microtubule associated complex
C	0005953	cellular_component	CAAX-protein geranylgeranyltransferase complex
C	0005965	cellular_component	protein farnesyltransferase complex
C	0007167	biological_process	enzyme-linked receptor protein signaling pathway
C	0008017	molecular_function	microtubule binding
C	0008270	molecular_function	zinc ion binding
C	0008284	biological_process	positive regulation of cell population proliferation
C	0008318	molecular_function	protein prenyltransferase activity
C	0014070	biological_process	response to organic cyclic compound
C	0018342	biological_process	protein prenylation
C	0018343	biological_process	protein farnesylation
C	0018344	biological_process	protein geranylgeranylation
C	0030971	molecular_function	receptor tyrosine kinase binding
C	0034097	biological_process	response to cytokine
C	0035022	biological_process	positive regulation of Rac protein signal transduction
C	0036094	molecular_function	small molecule binding
C	0042277	molecular_function	peptide binding
C	0043014	molecular_function	alpha-tubulin binding
C	0043066	biological_process	negative regulation of apoptotic process
C	0045787	biological_process	positive regulation of cell cycle
C	0051770	biological_process	positive regulation of nitric-oxide synthase biosynthetic process
C	0051771	biological_process	negative regulation of nitric-oxide synthase biosynthetic process
C	0060090	molecular_function	molecular adaptor activity
C	0090044	biological_process	positive regulation of tubulin deacetylation
C	1901363	molecular_function	heterocyclic compound binding
C	1904395	biological_process	positive regulation of skeletal muscle acetylcholine-gated channel clustering
D	0003824	molecular_function	catalytic activity
D	0004659	molecular_function	prenyltransferase activity
D	0004661	molecular_function	protein geranylgeranyltransferase activity
D	0004662	molecular_function	CAAX-protein geranylgeranyltransferase activity
D	0005515	molecular_function	protein binding
D	0005953	cellular_component	CAAX-protein geranylgeranyltransferase complex
D	0008270	molecular_function	zinc ion binding
D	0008284	biological_process	positive regulation of cell population proliferation
D	0008318	molecular_function	protein prenyltransferase activity
D	0018344	biological_process	protein geranylgeranylation
D	0034097	biological_process	response to cytokine
D	0036094	molecular_function	small molecule binding
D	0042277	molecular_function	peptide binding
D	0045787	biological_process	positive regulation of cell cycle
D	0046872	molecular_function	metal ion binding
D	0051771	biological_process	negative regulation of nitric-oxide synthase biosynthetic process
D	1901363	molecular_function	heterocyclic compound binding
E	0004659	molecular_function	prenyltransferase activity
E	0004660	molecular_function	protein farnesyltransferase activity
E	0004661	molecular_function	protein geranylgeranyltransferase activity
E	0004662	molecular_function	CAAX-protein geranylgeranyltransferase activity
E	0004663	molecular_function	Rab geranylgeranyltransferase activity
E	0005515	molecular_function	protein binding
E	0005737	cellular_component	cytoplasm
E	0005875	cellular_component	microtubule associated complex
E	0005953	cellular_component	CAAX-protein geranylgeranyltransferase complex
E	0005965	cellular_component	protein farnesyltransferase complex
E	0007167	biological_process	enzyme-linked receptor protein signaling pathway
E	0008017	molecular_function	microtubule binding
E	0008270	molecular_function	zinc ion binding
E	0008284	biological_process	positive regulation of cell population proliferation
E	0008318	molecular_function	protein prenyltransferase activity
E	0014070	biological_process	response to organic cyclic compound
E	0018342	biological_process	protein prenylation
E	0018343	biological_process	protein farnesylation
E	0018344	biological_process	protein geranylgeranylation
E	0030971	molecular_function	receptor tyrosine kinase binding
E	0034097	biological_process	response to cytokine
E	0035022	biological_process	positive regulation of Rac protein signal transduction
E	0036094	molecular_function	small molecule binding
E	0042277	molecular_function	peptide binding
E	0043014	molecular_function	alpha-tubulin binding
E	0043066	biological_process	negative regulation of apoptotic process
E	0045787	biological_process	positive regulation of cell cycle
E	0051770	biological_process	positive regulation of nitric-oxide synthase biosynthetic process
E	0051771	biological_process	negative regulation of nitric-oxide synthase biosynthetic process
E	0060090	molecular_function	molecular adaptor activity
E	0090044	biological_process	positive regulation of tubulin deacetylation
E	1901363	molecular_function	heterocyclic compound binding
E	1904395	biological_process	positive regulation of skeletal muscle acetylcholine-gated channel clustering
F	0003824	molecular_function	catalytic activity
F	0004659	molecular_function	prenyltransferase activity
F	0004661	molecular_function	protein geranylgeranyltransferase activity
F	0004662	molecular_function	CAAX-protein geranylgeranyltransferase activity
F	0005515	molecular_function	protein binding
F	0005953	cellular_component	CAAX-protein geranylgeranyltransferase complex
F	0008270	molecular_function	zinc ion binding
F	0008284	biological_process	positive regulation of cell population proliferation
F	0008318	molecular_function	protein prenyltransferase activity
F	0018344	biological_process	protein geranylgeranylation
F	0034097	biological_process	response to cytokine
F	0036094	molecular_function	small molecule binding
F	0042277	molecular_function	peptide binding
F	0045787	biological_process	positive regulation of cell cycle
F	0046872	molecular_function	metal ion binding
F	0051771	biological_process	negative regulation of nitric-oxide synthase biosynthetic process
F	1901363	molecular_function	heterocyclic compound binding
G	0004659	molecular_function	prenyltransferase activity
G	0004660	molecular_function	protein farnesyltransferase activity
G	0004661	molecular_function	protein geranylgeranyltransferase activity
G	0004662	molecular_function	CAAX-protein geranylgeranyltransferase activity
G	0004663	molecular_function	Rab geranylgeranyltransferase activity
G	0005515	molecular_function	protein binding
G	0005737	cellular_component	cytoplasm
G	0005875	cellular_component	microtubule associated complex
G	0005953	cellular_component	CAAX-protein geranylgeranyltransferase complex
G	0005965	cellular_component	protein farnesyltransferase complex
G	0007167	biological_process	enzyme-linked receptor protein signaling pathway
G	0008017	molecular_function	microtubule binding
G	0008270	molecular_function	zinc ion binding
G	0008284	biological_process	positive regulation of cell population proliferation
G	0008318	molecular_function	protein prenyltransferase activity
G	0014070	biological_process	response to organic cyclic compound
G	0018342	biological_process	protein prenylation
G	0018343	biological_process	protein farnesylation
G	0018344	biological_process	protein geranylgeranylation
G	0030971	molecular_function	receptor tyrosine kinase binding
G	0034097	biological_process	response to cytokine
G	0035022	biological_process	positive regulation of Rac protein signal transduction
G	0036094	molecular_function	small molecule binding
G	0042277	molecular_function	peptide binding
G	0043014	molecular_function	alpha-tubulin binding
G	0043066	biological_process	negative regulation of apoptotic process
G	0045787	biological_process	positive regulation of cell cycle
G	0051770	biological_process	positive regulation of nitric-oxide synthase biosynthetic process
G	0051771	biological_process	negative regulation of nitric-oxide synthase biosynthetic process
G	0060090	molecular_function	molecular adaptor activity
G	0090044	biological_process	positive regulation of tubulin deacetylation
G	1901363	molecular_function	heterocyclic compound binding
G	1904395	biological_process	positive regulation of skeletal muscle acetylcholine-gated channel clustering
H	0003824	molecular_function	catalytic activity
H	0004659	molecular_function	prenyltransferase activity
H	0004661	molecular_function	protein geranylgeranyltransferase activity
H	0004662	molecular_function	CAAX-protein geranylgeranyltransferase activity
H	0005515	molecular_function	protein binding
H	0005953	cellular_component	CAAX-protein geranylgeranyltransferase complex
H	0008270	molecular_function	zinc ion binding
H	0008284	biological_process	positive regulation of cell population proliferation
H	0008318	molecular_function	protein prenyltransferase activity
H	0018344	biological_process	protein geranylgeranylation
H	0034097	biological_process	response to cytokine
H	0036094	molecular_function	small molecule binding
H	0042277	molecular_function	peptide binding
H	0045787	biological_process	positive regulation of cell cycle
H	0046872	molecular_function	metal ion binding
H	0051771	biological_process	negative regulation of nitric-oxide synthase biosynthetic process
H	1901363	molecular_function	heterocyclic compound binding
I	0004659	molecular_function	prenyltransferase activity
I	0004660	molecular_function	protein farnesyltransferase activity
I	0004661	molecular_function	protein geranylgeranyltransferase activity
I	0004662	molecular_function	CAAX-protein geranylgeranyltransferase activity
I	0004663	molecular_function	Rab geranylgeranyltransferase activity
I	0005515	molecular_function	protein binding
I	0005737	cellular_component	cytoplasm
I	0005875	cellular_component	microtubule associated complex
I	0005953	cellular_component	CAAX-protein geranylgeranyltransferase complex
I	0005965	cellular_component	protein farnesyltransferase complex
I	0007167	biological_process	enzyme-linked receptor protein signaling pathway
I	0008017	molecular_function	microtubule binding
I	0008270	molecular_function	zinc ion binding
I	0008284	biological_process	positive regulation of cell population proliferation
I	0008318	molecular_function	protein prenyltransferase activity
I	0014070	biological_process	response to organic cyclic compound
I	0018342	biological_process	protein prenylation
I	0018343	biological_process	protein farnesylation
I	0018344	biological_process	protein geranylgeranylation
I	0030971	molecular_function	receptor tyrosine kinase binding
I	0034097	biological_process	response to cytokine
I	0035022	biological_process	positive regulation of Rac protein signal transduction
I	0036094	molecular_function	small molecule binding
I	0042277	molecular_function	peptide binding
I	0043014	molecular_function	alpha-tubulin binding
I	0043066	biological_process	negative regulation of apoptotic process
I	0045787	biological_process	positive regulation of cell cycle
I	0051770	biological_process	positive regulation of nitric-oxide synthase biosynthetic process
I	0051771	biological_process	negative regulation of nitric-oxide synthase biosynthetic process
I	0060090	molecular_function	molecular adaptor activity
I	0090044	biological_process	positive regulation of tubulin deacetylation
I	1901363	molecular_function	heterocyclic compound binding
I	1904395	biological_process	positive regulation of skeletal muscle acetylcholine-gated channel clustering
J	0003824	molecular_function	catalytic activity
J	0004659	molecular_function	prenyltransferase activity
J	0004661	molecular_function	protein geranylgeranyltransferase activity
J	0004662	molecular_function	CAAX-protein geranylgeranyltransferase activity
J	0005515	molecular_function	protein binding
J	0005953	cellular_component	CAAX-protein geranylgeranyltransferase complex
J	0008270	molecular_function	zinc ion binding
J	0008284	biological_process	positive regulation of cell population proliferation
J	0008318	molecular_function	protein prenyltransferase activity
J	0018344	biological_process	protein geranylgeranylation
J	0034097	biological_process	response to cytokine
J	0036094	molecular_function	small molecule binding
J	0042277	molecular_function	peptide binding
J	0045787	biological_process	positive regulation of cell cycle
J	0046872	molecular_function	metal ion binding
J	0051771	biological_process	negative regulation of nitric-oxide synthase biosynthetic process
J	1901363	molecular_function	heterocyclic compound binding
K	0004659	molecular_function	prenyltransferase activity
K	0004660	molecular_function	protein farnesyltransferase activity
K	0004661	molecular_function	protein geranylgeranyltransferase activity
K	0004662	molecular_function	CAAX-protein geranylgeranyltransferase activity
K	0004663	molecular_function	Rab geranylgeranyltransferase activity
K	0005515	molecular_function	protein binding
K	0005737	cellular_component	cytoplasm
K	0005875	cellular_component	microtubule associated complex
K	0005953	cellular_component	CAAX-protein geranylgeranyltransferase complex
K	0005965	cellular_component	protein farnesyltransferase complex
K	0007167	biological_process	enzyme-linked receptor protein signaling pathway
K	0008017	molecular_function	microtubule binding
K	0008270	molecular_function	zinc ion binding
K	0008284	biological_process	positive regulation of cell population proliferation
K	0008318	molecular_function	protein prenyltransferase activity
K	0014070	biological_process	response to organic cyclic compound
K	0018342	biological_process	protein prenylation
K	0018343	biological_process	protein farnesylation
K	0018344	biological_process	protein geranylgeranylation
K	0030971	molecular_function	receptor tyrosine kinase binding
K	0034097	biological_process	response to cytokine
K	0035022	biological_process	positive regulation of Rac protein signal transduction
K	0036094	molecular_function	small molecule binding
K	0042277	molecular_function	peptide binding
K	0043014	molecular_function	alpha-tubulin binding
K	0043066	biological_process	negative regulation of apoptotic process
K	0045787	biological_process	positive regulation of cell cycle
K	0051770	biological_process	positive regulation of nitric-oxide synthase biosynthetic process
K	0051771	biological_process	negative regulation of nitric-oxide synthase biosynthetic process
K	0060090	molecular_function	molecular adaptor activity
K	0090044	biological_process	positive regulation of tubulin deacetylation
K	1901363	molecular_function	heterocyclic compound binding
K	1904395	biological_process	positive regulation of skeletal muscle acetylcholine-gated channel clustering
L	0003824	molecular_function	catalytic activity
L	0004659	molecular_function	prenyltransferase activity
L	0004661	molecular_function	protein geranylgeranyltransferase activity
L	0004662	molecular_function	CAAX-protein geranylgeranyltransferase activity
L	0005515	molecular_function	protein binding
L	0005953	cellular_component	CAAX-protein geranylgeranyltransferase complex
L	0008270	molecular_function	zinc ion binding
L	0008284	biological_process	positive regulation of cell population proliferation
L	0008318	molecular_function	protein prenyltransferase activity
L	0018344	biological_process	protein geranylgeranylation
L	0034097	biological_process	response to cytokine
L	0036094	molecular_function	small molecule binding
L	0042277	molecular_function	peptide binding
L	0045787	biological_process	positive regulation of cell cycle
L	0046872	molecular_function	metal ion binding
L	0051771	biological_process	negative regulation of nitric-oxide synthase biosynthetic process
L	1901363	molecular_function	heterocyclic compound binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN B 378

Chain	Residue
B	ASP269
B	CYS271
B	HIS321
M	CYS3

site_id	AC2
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN D 378

Chain	Residue
D	ASP269
D	CYS271
D	HIS321
N	CYS3

site_id	AC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN F 378

Chain	Residue
F	CYS271
F	HIS321
O	CYS3
F	ASP269

site_id	AC4
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN H 378

Chain	Residue
H	ASP269
H	CYS271
H	HIS321
P	CYS3

site_id	AC5
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN J 378

Chain	Residue
J	ASP269
J	CYS271
J	HIS321
Q	CYS3

site_id	AC6
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN L 378

Chain	Residue
L	ASP269
L	CYS271
L	HIS321
R	CYS3

site_id	AC7
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CL D 379

Chain	Residue
D	LYS284
D	ILE285
D	PHE286
D	GLN287

site_id	AC8
Number of Residues	4
Details	BINDING SITE FOR RESIDUE CL F 379

Chain	Residue
F	LYS284
F	ILE285
F	PHE286
F	GLN287

site_id	AC9
Number of Residues	5
Details	BINDING SITE FOR RESIDUE CL H 379

Chain	Residue
H	LYS281
H	LYS284
H	ILE285
H	PHE286
H	GLN287

site_id	BC1
Number of Residues	5
Details	BINDING SITE FOR RESIDUE MES F 380

Chain	Residue
F	CYS338
F	LYS339
F	THR348
F	ARG349
L	LEU305

site_id	BC2
Number of Residues	13
Details	BINDING SITE FOR RESIDUE MGM B 379

Chain	Residue
A	LYS164
A	TYR166
A	LYS198
A	TYR200
A	HIS201
B	ARG173
B	HIS219
B	ARG263
B	LYS266
B	TYR272
B	TRP275
M	VAL4
M	LEU5

site_id	BC3
Number of Residues	11
Details	BINDING SITE FOR RESIDUE MGM D 380

Chain	Residue
C	LYS164
C	TYR166
C	LYS198
C	TYR200
C	HIS201
D	ARG173
D	HIS219
D	ARG263
D	LYS266
D	TYR272
D	TRP275

site_id	BC4
Number of Residues	13
Details	BINDING SITE FOR RESIDUE MGM F 381

Chain	Residue
E	LYS164
E	LYS198
E	TYR200
E	HIS201
F	ARG173
F	HIS219
F	ARG263
F	LYS266
F	TYR272
F	TRP275
F	HOH383
F	HOH384
O	VAL4

site_id	BC5
Number of Residues	13
Details	BINDING SITE FOR RESIDUE MGM H 380

Chain	Residue
G	LYS164
G	TYR200
H	PHE53
H	ARG173
H	HIS219
H	GLY221
H	ARG263
H	LYS266
H	TYR272
H	TRP275
H	ASN345
P	VAL4
P	LEU5

site_id	BC6
Number of Residues	13
Details	BINDING SITE FOR RESIDUE MGM J 379

Chain	Residue
J	LYS266
J	TYR272
J	TRP275
J	HOH381
J	HOH396
Q	VAL4
I	LYS164
I	LYS198
I	TYR200
I	HIS201
J	ARG173
J	HIS219
J	ARG263

site_id	BC7
Number of Residues	13
Details	BINDING SITE FOR RESIDUE MGM L 379

Chain	Residue
K	LYS164
K	LYS198
K	TYR200
K	HIS201
L	TYR126
L	ARG173
L	HIS219
L	ARG263
L	LYS266
L	TYR272
L	TRP275
L	HOH414
R	VAL4

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	36
Details	BINDING: BINDING => ECO:0000269\|PubMed:14609943, ECO:0007744\|PDB:1N4P

Chain	Residue	Details
B	HIS219
D	CYS271
D	TYR272
D	HIS321
F	HIS219
F	ARG263
F	ASP269
F	CYS271
F	TYR272
F	HIS321
H	HIS219
B	ARG263
H	ARG263
H	ASP269
H	CYS271
H	TYR272
H	HIS321
J	HIS219
J	ARG263
J	ASP269
J	CYS271
J	TYR272
B	ASP269
J	HIS321
L	HIS219
L	ARG263
L	ASP269
L	CYS271
L	TYR272
L	HIS321
B	CYS271
B	TYR272
B	HIS321
D	HIS219
D	ARG263
D	ASP269

Catalytic Information from CSA

site_id	CSA1
Number of Residues	2
Details	Annotated By Reference To The Literature 1d8d

Chain	Residue	Details
A	LYS164
B	TYR272

site_id	CSA2
Number of Residues	2
Details	Annotated By Reference To The Literature 1d8d

Chain	Residue	Details
C	LYS164
D	TYR272

site_id	CSA3
Number of Residues	2
Details	Annotated By Reference To The Literature 1d8d

Chain	Residue	Details
F	TYR272
E	LYS164

site_id	CSA4
Number of Residues	2
Details	Annotated By Reference To The Literature 1d8d

Chain	Residue	Details
H	TYR272
G	LYS164

site_id	CSA5
Number of Residues	2
Details	Annotated By Reference To The Literature 1d8d

Chain	Residue	Details
J	TYR272
I	LYS164

site_id	CSA6
Number of Residues	2
Details	Annotated By Reference To The Literature 1d8d

Chain	Residue	Details
K	LYS164
L	TYR272

site_id	MCSA1
Number of Residues	1
Details	M-CSA 484

Chain	Residue	Details
A	LYS164	electrostatic stabiliser

site_id	MCSA2
Number of Residues	1
Details	M-CSA 484

Chain	Residue	Details
C	LYS164	electrostatic stabiliser

site_id	MCSA3
Number of Residues	1
Details	M-CSA 484

Chain	Residue	Details
E	LYS164	electrostatic stabiliser

site_id	MCSA4
Number of Residues	1
Details	M-CSA 484

Chain	Residue	Details
G	LYS164	electrostatic stabiliser

site_id	MCSA5
Number of Residues	1
Details	M-CSA 484

Chain	Residue	Details
I	LYS164	electrostatic stabiliser

site_id	MCSA6
Number of Residues	1
Details	M-CSA 484

Chain	Residue	Details
K	LYS164	electrostatic stabiliser

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)