Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

1TJL

Crystal structure of transcription factor DksA from E. coli

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005737	cellular_component	cytoplasm
A	0005829	cellular_component	cytosol
A	0006302	biological_process	double-strand break repair
A	0006355	biological_process	regulation of DNA-templated transcription
A	0008270	molecular_function	zinc ion binding
A	0010468	biological_process	regulation of gene expression
A	0046872	molecular_function	metal ion binding
A	0097216	molecular_function	guanosine tetraphosphate binding
B	0005737	cellular_component	cytoplasm
B	0005829	cellular_component	cytosol
B	0006302	biological_process	double-strand break repair
B	0006355	biological_process	regulation of DNA-templated transcription
B	0008270	molecular_function	zinc ion binding
B	0010468	biological_process	regulation of gene expression
B	0046872	molecular_function	metal ion binding
B	0097216	molecular_function	guanosine tetraphosphate binding
C	0005737	cellular_component	cytoplasm
C	0005829	cellular_component	cytosol
C	0006302	biological_process	double-strand break repair
C	0006355	biological_process	regulation of DNA-templated transcription
C	0008270	molecular_function	zinc ion binding
C	0010468	biological_process	regulation of gene expression
C	0046872	molecular_function	metal ion binding
C	0097216	molecular_function	guanosine tetraphosphate binding
D	0005737	cellular_component	cytoplasm
D	0005829	cellular_component	cytosol
D	0006302	biological_process	double-strand break repair
D	0006355	biological_process	regulation of DNA-templated transcription
D	0008270	molecular_function	zinc ion binding
D	0010468	biological_process	regulation of gene expression
D	0046872	molecular_function	metal ion binding
D	0097216	molecular_function	guanosine tetraphosphate binding
E	0005737	cellular_component	cytoplasm
E	0005829	cellular_component	cytosol
E	0006302	biological_process	double-strand break repair
E	0006355	biological_process	regulation of DNA-templated transcription
E	0008270	molecular_function	zinc ion binding
E	0010468	biological_process	regulation of gene expression
E	0046872	molecular_function	metal ion binding
E	0097216	molecular_function	guanosine tetraphosphate binding
F	0005737	cellular_component	cytoplasm
F	0005829	cellular_component	cytosol
F	0006302	biological_process	double-strand break repair
F	0006355	biological_process	regulation of DNA-templated transcription
F	0008270	molecular_function	zinc ion binding
F	0010468	biological_process	regulation of gene expression
F	0046872	molecular_function	metal ion binding
F	0097216	molecular_function	guanosine tetraphosphate binding
G	0005737	cellular_component	cytoplasm
G	0005829	cellular_component	cytosol
G	0006302	biological_process	double-strand break repair
G	0006355	biological_process	regulation of DNA-templated transcription
G	0008270	molecular_function	zinc ion binding
G	0010468	biological_process	regulation of gene expression
G	0046872	molecular_function	metal ion binding
G	0097216	molecular_function	guanosine tetraphosphate binding
H	0005737	cellular_component	cytoplasm
H	0005829	cellular_component	cytosol
H	0006302	biological_process	double-strand break repair
H	0006355	biological_process	regulation of DNA-templated transcription
H	0008270	molecular_function	zinc ion binding
H	0010468	biological_process	regulation of gene expression
H	0046872	molecular_function	metal ion binding
H	0097216	molecular_function	guanosine tetraphosphate binding
I	0005737	cellular_component	cytoplasm
I	0005829	cellular_component	cytosol
I	0006302	biological_process	double-strand break repair
I	0006355	biological_process	regulation of DNA-templated transcription
I	0008270	molecular_function	zinc ion binding
I	0010468	biological_process	regulation of gene expression
I	0046872	molecular_function	metal ion binding
I	0097216	molecular_function	guanosine tetraphosphate binding
J	0005737	cellular_component	cytoplasm
J	0005829	cellular_component	cytosol
J	0006302	biological_process	double-strand break repair
J	0006355	biological_process	regulation of DNA-templated transcription
J	0008270	molecular_function	zinc ion binding
J	0010468	biological_process	regulation of gene expression
J	0046872	molecular_function	metal ion binding
J	0097216	molecular_function	guanosine tetraphosphate binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN A 200

Chain	Residue
A	CYS114
A	CYS117
A	CYS135
A	CYS138

site_id	AC2
Number of Residues	5
Details	BINDING SITE FOR RESIDUE ZN B 200

Chain	Residue
B	CYS114
B	SER116
B	CYS117
B	CYS135
B	CYS138

site_id	AC3
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN C 200

Chain	Residue
C	CYS114
C	CYS117
C	CYS135
C	CYS138

site_id	AC4
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN D 200

Chain	Residue
D	CYS114
D	CYS117
D	CYS135
D	CYS138

site_id	AC5
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN E 200

Chain	Residue
E	CYS114
E	CYS117
E	CYS135
E	CYS138

site_id	AC6
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN F 200

Chain	Residue
F	CYS114
F	CYS117
F	CYS135
F	CYS138

site_id	AC7
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN G 200

Chain	Residue
G	CYS114
G	CYS117
G	CYS135
G	CYS138

site_id	AC8
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN H 200

Chain	Residue
H	CYS114
H	CYS117
H	CYS135
H	CYS138

site_id	AC9
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN I 200

Chain	Residue
I	CYS114
I	CYS117
I	CYS135
I	CYS138

site_id	BC1
Number of Residues	4
Details	BINDING SITE FOR RESIDUE ZN J 200

Chain	Residue
J	CYS114
J	CYS117
J	CYS135
J	CYS138

Functional Information from PROSITE/UniProt

site_id	PS01102
Number of Residues	25
Details	ZF_DKSA_1 Prokaryotic dksA C4-type zinc finger. CEsCgveIgirRlearPtadlCidC

Chain	Residue	Details
A	CYS114-CYS138

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	240
Details	Zinc finger: {"description":"dksA C4-type","evidences":[{"source":"HAMAP-Rule","id":"MF_00926","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	210
Details	Coiled coil: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00926","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	40
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00926","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"15294156","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)