Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1TAE

Structural rearrangement accompanying NAD+ synthesis within a bacterial DNA ligase crystal

Functional Information from GO Data
ChainGOidnamespacecontents
A0003911molecular_functionDNA ligase (NAD+) activity
B0003911molecular_functionDNA ligase (NAD+) activity
C0003911molecular_functionDNA ligase (NAD+) activity
D0003911molecular_functionDNA ligase (NAD+) activity
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 405
ChainResidue
ATYR30
ALEU124
AALA125
AARG141
AARG202
AHOH416
AHOH453

site_idAC2
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 406
ChainResidue
AARG129
AARG137
ALYS79
APRO81

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 407
ChainResidue
AARG190
APHE198
AARG220

site_idAC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 A 408
ChainResidue
APRO81
AHIS82
AASP83
ASER127
AARG129
AARG137
AGLU171
AARG173
AHOH415

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 A 409
ChainResidue
ASER26
ATYR30
ATYR42
AARG68
ALYS306
ANAD401
AHOH413
AHOH422

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 410
ChainResidue
CTHR304
CARG309
CHOH445

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 411
ChainResidue
AARG14
BTRP268
BHIS275
BTYR314

site_idAC8
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 B 412
ChainResidue
BTYR30
BLEU124
BALA125
BARG141
BARG202
BHOH537
BHOH566
BHOH575
BHOH581

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 413
ChainResidue
BARG129
BARG137
BHOH561
BHOH577

site_idBC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 B 415
ChainResidue
BHIS82
BASP83
BSER127
BARG129
BARG137
BGLU171
BARG173
BHOH555

site_idBC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 B 417
ChainResidue
AHOH426
BTYR177
BPRO179
BASN223
BARG253

site_idBC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 B 418
ChainResidue
BTHR304
BARG309

site_idBC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 419
ChainResidue
ATRP268
AGLU272
AHIS275
ATYR314
BARG14
BGLN21

site_idBC5
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 B 420
ChainResidue
BVAL160
BPRO161
BMET162
BARG163

site_idBC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 C 421
ChainResidue
CTYR30
CLEU124
CALA125
CARG141
CARG202
CHOH434
CHOH457

site_idBC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 C 422
ChainResidue
CPRO81
CARG129
CARG137

site_idBC8
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 C 423
ChainResidue
CHIS82
CASP83
CSER127
CARG129
CARG137
CGLU171
CARG173
CHOH430

site_idBC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 C 424
ChainResidue
CTRP268
CGLU272
CHIS275
CTYR314

site_idCC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 D 425
ChainResidue
DLEU124
DALA125
DARG141
DARG202
DHOH537
DHOH570
DTYR30

site_idCC2
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 D 426
ChainResidue
DARG129
DARG137

site_idCC3
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 D 427
ChainResidue
DARG190
DARG220

site_idCC4
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 D 428
ChainResidue
DPRO81
DHIS82
DASP83
DSER127
DARG129
DARG137
DGLU171
DARG173
DHOH556

site_idCC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE SO4 D 429
ChainResidue
DTHR304
DARG309

site_idCC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 D 430
ChainResidue
DHIS275
DTYR314
DHOH552

site_idCC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE NA B 531
ChainResidue
BGLU38
BASP39
BASN200

site_idCC8
Number of Residues25
DetailsBINDING SITE FOR RESIDUE NAD A 401
ChainResidue
ATYR25
ATYR29
ATYR30
AVAL37
AGLU38
AASP39
ATYR42
AASP43
ASER88
ALEU89
AASP91
AGLU118
ALEU119
ALYS120
AILE121
AALA125
AARG141
AGLU175
ATYR227
AVAL289
ALYS291
ALYS315
ASO4409
AHOH413
AHOH416

site_idCC9
Number of Residues25
DetailsBINDING SITE FOR RESIDUE NAD B 402
ChainResidue
BTYR25
BSER26
BTYR29
BTYR30
BVAL37
BASP39
BTYR42
BASP43
BTYR87
BSER88
BLEU89
BASP91
BGLU118
BLEU119
BLYS120
BILE121
BALA125
BARG141
BGLU175
BTYR227
BVAL289
BLYS291
BLYS315
BHOH537
BHOH543

site_idDC1
Number of Residues24
DetailsBINDING SITE FOR RESIDUE NAD C 403
ChainResidue
CSER26
CTYR29
CTYR30
CVAL37
CGLU38
CASP39
CTYR42
CASP43
CSER88
CLEU89
CASP91
CGLU118
CLEU119
CLYS120
CILE121
CALA125
CARG141
CGLU175
CTYR227
CVAL289
CLYS291
CLYS315
CHOH425
CHOH457

site_idDC2
Number of Residues24
DetailsBINDING SITE FOR RESIDUE NAD D 404
ChainResidue
DTYR25
DTYR29
DTYR30
DVAL37
DASP39
DTYR42
DASP43
DTYR87
DSER88
DLEU89
DASP91
DGLU118
DLEU119
DLYS120
DILE121
DALA125
DARG141
DGLU175
DTYR227
DLYS291
DLYS315
DHOH534
DHOH537
DHOH545

Functional Information from PROSITE/UniProt
site_idPS01055
Number of Residues30
DetailsDNA_LIGASE_N1 NAD-dependent DNA ligase signature 1. KIDGLAislrYenGvFvrgaTRGDGtvGEN
ChainResidueDetails
ALYS120-ASN149

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: N6-AMP-lysine intermediate => ECO:0000255|HAMAP-Rule:MF_01588
ChainResidueDetails
ALYS120
BLYS120
CLYS120
DLYS120

site_idSWS_FT_FI2
Number of Residues28
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01588, ECO:0000269|PubMed:15296738
ChainResidueDetails
AGLU175
ALYS291
ALYS315
BASP39
BSER88
BGLU118
BARG141
BGLU175
BLYS291
BLYS315
CASP39
CSER88
CGLU118
CARG141
CGLU175
CLYS291
CLYS315
DASP39
DSER88
DGLU118
DARG141
DGLU175
DLYS291
DLYS315
AASP39
ASER88
AGLU118
AARG141

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon