1TA9
Crystal structure of glycerol dehydrogenase from Schizosaccharomyces pombe
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005739 | cellular_component | mitochondrion |
| A | 0006071 | biological_process | glycerol metabolic process |
| A | 0006091 | biological_process | generation of precursor metabolites and energy |
| A | 0008270 | molecular_function | zinc ion binding |
| A | 0008888 | molecular_function | glycerol dehydrogenase (NAD+) activity |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0016614 | molecular_function | oxidoreductase activity, acting on CH-OH group of donors |
| A | 0019563 | biological_process | glycerol catabolic process |
| A | 0019564 | biological_process | aerobic glycerol catabolic process |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0061613 | biological_process | glycolytic process from glycerol |
| B | 0005739 | cellular_component | mitochondrion |
| B | 0006071 | biological_process | glycerol metabolic process |
| B | 0006091 | biological_process | generation of precursor metabolites and energy |
| B | 0008270 | molecular_function | zinc ion binding |
| B | 0008888 | molecular_function | glycerol dehydrogenase (NAD+) activity |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0016614 | molecular_function | oxidoreductase activity, acting on CH-OH group of donors |
| B | 0019563 | biological_process | glycerol catabolic process |
| B | 0019564 | biological_process | aerobic glycerol catabolic process |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0061613 | biological_process | glycolytic process from glycerol |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ZN B 1501 |
| Chain | Residue |
| B | ASP232 |
| B | HIS315 |
| B | HIS333 |
| B | GOL1402 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ZN A 1502 |
| Chain | Residue |
| A | ASP232 |
| A | HIS315 |
| A | HIS333 |
| A | GOL1401 |
| site_id | AC3 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE K A 1503 |
| Chain | Residue |
| A | ASP232 |
| A | SER235 |
| A | THR236 |
| A | SER302 |
| A | HIS315 |
| A | GOL1401 |
| A | HOH1540 |
| A | ASP182 |
| site_id | AC4 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE K B 1504 |
| Chain | Residue |
| B | ASP182 |
| B | ASP232 |
| B | SER235 |
| B | THR236 |
| B | HIS315 |
| B | GOL1402 |
| B | HOH1526 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE ALA A 1504 |
| Chain | Residue |
| A | ALA130 |
| A | VAL190 |
| A | ILE191 |
| A | TYR192 |
| A | ALA1505 |
| A | HOH1623 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE ALA A 1505 |
| Chain | Residue |
| A | ALA130 |
| A | ALA1504 |
| A | HOH1740 |
| site_id | AC7 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE GOL A 1401 |
| Chain | Residue |
| A | ASP182 |
| A | ASP232 |
| A | HIS315 |
| A | HIS333 |
| A | ZN1502 |
| A | K1503 |
| A | HOH1814 |
| A | HOH1871 |
| site_id | AC8 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE GOL B 1402 |
| Chain | Residue |
| B | ASP182 |
| B | ASP232 |
| B | HIS315 |
| B | HIS333 |
| B | ZN1501 |
| B | K1504 |
| B | HOH1749 |
| site_id | AC9 |
| Number of Residues | 12 |
| Details | BINDING SITE FOR RESIDUE GOL A 1403 |
| Chain | Residue |
| A | LYS162 |
| A | ALA165 |
| A | LEU170 |
| A | SER172 |
| A | SER187 |
| A | TYR204 |
| A | LEU206 |
| A | ASN207 |
| A | PRO208 |
| A | HOH1530 |
| A | HOH1611 |
| A | HOH1881 |
Functional Information from PROSITE/UniProt
| site_id | PS00913 |
| Number of Residues | 29 |
| Details | ADH_IRON_1 Iron-containing alcohol dehydrogenases signature 1. IFiDtdvivraPvrflIsGigDALstwvE |
| Chain | Residue | Details |
| A | ILE211-GLU239 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 24 |
| Details | Binding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"AUG-2005","submissionDatabase":"PDB data bank","title":"Crystal structure of glycerol dehydrogenase from Schizosaccharomyces pombe.","authors":["Mulichak A.M."]}}]} |
| Chain | Residue | Details |
Catalytic Information from CSA
| site_id | CSA1 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1dqs |
| Chain | Residue | Details |
| A | ASN319 |
| site_id | CSA2 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1dqs |
| Chain | Residue | Details |
| B | ASN319 |
| site_id | CSA3 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1dqs |
| Chain | Residue | Details |
| A | HIS315 |
| site_id | CSA4 |
| Number of Residues | 1 |
| Details | Annotated By Reference To The Literature 1dqs |
| Chain | Residue | Details |
| B | HIS315 |
