1TA9
Crystal structure of glycerol dehydrogenase from Schizosaccharomyces pombe
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005739 | cellular_component | mitochondrion |
A | 0006071 | biological_process | glycerol metabolic process |
A | 0008270 | molecular_function | zinc ion binding |
A | 0008888 | molecular_function | glycerol dehydrogenase (NAD+) activity |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0016614 | molecular_function | oxidoreductase activity, acting on CH-OH group of donors |
A | 0019564 | biological_process | aerobic glycerol catabolic process |
A | 0046872 | molecular_function | metal ion binding |
A | 0061613 | biological_process | glycolytic process from glycerol |
B | 0005739 | cellular_component | mitochondrion |
B | 0006071 | biological_process | glycerol metabolic process |
B | 0008270 | molecular_function | zinc ion binding |
B | 0008888 | molecular_function | glycerol dehydrogenase (NAD+) activity |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0016614 | molecular_function | oxidoreductase activity, acting on CH-OH group of donors |
B | 0019564 | biological_process | aerobic glycerol catabolic process |
B | 0046872 | molecular_function | metal ion binding |
B | 0061613 | biological_process | glycolytic process from glycerol |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN B 1501 |
Chain | Residue |
B | ASP232 |
B | HIS315 |
B | HIS333 |
B | GOL1402 |
site_id | AC2 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE ZN A 1502 |
Chain | Residue |
A | ASP232 |
A | HIS315 |
A | HIS333 |
A | GOL1401 |
site_id | AC3 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE K A 1503 |
Chain | Residue |
A | ASP232 |
A | SER235 |
A | THR236 |
A | SER302 |
A | HIS315 |
A | GOL1401 |
A | HOH1540 |
A | ASP182 |
site_id | AC4 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE K B 1504 |
Chain | Residue |
B | ASP182 |
B | ASP232 |
B | SER235 |
B | THR236 |
B | HIS315 |
B | GOL1402 |
B | HOH1526 |
site_id | AC5 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE ALA A 1504 |
Chain | Residue |
A | ALA130 |
A | VAL190 |
A | ILE191 |
A | TYR192 |
A | ALA1505 |
A | HOH1623 |
site_id | AC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE ALA A 1505 |
Chain | Residue |
A | ALA130 |
A | ALA1504 |
A | HOH1740 |
site_id | AC7 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE GOL A 1401 |
Chain | Residue |
A | ASP182 |
A | ASP232 |
A | HIS315 |
A | HIS333 |
A | ZN1502 |
A | K1503 |
A | HOH1814 |
A | HOH1871 |
site_id | AC8 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GOL B 1402 |
Chain | Residue |
B | ASP182 |
B | ASP232 |
B | HIS315 |
B | HIS333 |
B | ZN1501 |
B | K1504 |
B | HOH1749 |
site_id | AC9 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE GOL A 1403 |
Chain | Residue |
A | LYS162 |
A | ALA165 |
A | LEU170 |
A | SER172 |
A | SER187 |
A | TYR204 |
A | LEU206 |
A | ASN207 |
A | PRO208 |
A | HOH1530 |
A | HOH1611 |
A | HOH1881 |
Functional Information from PROSITE/UniProt
site_id | PS00913 |
Number of Residues | 29 |
Details | ADH_IRON_1 Iron-containing alcohol dehydrogenases signature 1. IFiDtdvivraPvrflIsGigDALstwvE |
Chain | Residue | Details |
A | ILE211-GLU239 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 14 |
Details | BINDING: BINDING => ECO:0000250 |
Chain | Residue | Details |
A | ASP99 | |
B | THR177 | |
B | ASP182 | |
B | SER186 | |
B | LEU188 | |
B | TYR192 | |
A | GLY155 | |
A | THR177 | |
A | ASP182 | |
A | SER186 | |
A | LEU188 | |
A | TYR192 | |
B | ASP99 | |
B | GLY155 |
site_id | SWS_FT_FI2 |
Number of Residues | 6 |
Details | BINDING: BINDING => ECO:0000269|Ref.4 |
Chain | Residue | Details |
A | ASP232 | |
A | HIS315 | |
A | HIS333 | |
B | ASP232 | |
B | HIS315 | |
B | HIS333 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1dqs |
Chain | Residue | Details |
A | ASN319 |
site_id | CSA2 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1dqs |
Chain | Residue | Details |
B | ASN319 |
site_id | CSA3 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1dqs |
Chain | Residue | Details |
A | HIS315 |
site_id | CSA4 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1dqs |
Chain | Residue | Details |
B | HIS315 |