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1TA8

Structural rearrangement accompanying NAD+ synthesis within a bacterial DNA ligase crystal

Functional Information from GO Data
ChainGOidnamespacecontents
A0003911molecular_functionDNA ligase (NAD+) activity
Functional Information from PDB Data
site_idAC1
Number of Residues9
DetailsBINDING SITE FOR RESIDUE SO4 A 402
ChainResidue
AGLY123
ALEU124
AALA125
AARG141
AARG202
AHOH658
AHOH736
AHOH863
AHOH875

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 403
ChainResidue
APRO81
AARG129
AARG137
AHOH635
AHOH664
AHOH883

site_idAC3
Number of Residues12
DetailsBINDING SITE FOR RESIDUE NMN A 401
ChainResidue
ATYR25
ATYR29
ATYR30
AVAL37
AASP39
ATYR42
AASP43
AARG158
AHOH603
AHOH648
AHOH701
AHOH824

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE GOL A 601
ChainResidue
ATYR227
APHE303
AHOH667
AHOH759

Functional Information from PROSITE/UniProt
site_idPS01055
Number of Residues30
DetailsDNA_LIGASE_N1 NAD-dependent DNA ligase signature 1. KIDGLAislrYenGvFvrgaTRGDGtvGEN
ChainResidueDetails
ALYS120-ASN149

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"description":"N6-AMP-lysine intermediate","evidences":[{"source":"HAMAP-Rule","id":"MF_01588","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues12
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01588","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"15296738","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1b04
ChainResidueDetails
ALYS120

site_idCSA2
Number of Residues4
DetailsAnnotated By Reference To The Literature 1b04
ChainResidueDetails
ALYS120
ALYS315
AASP122
AARG202

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PDB entries from 2025-12-17

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