1T13
Crystal Structure Of Lumazine Synthase From Brucella Abortus Bound To 5-nitro-6-(D-ribitylamino)-2,4(1H,3H) pyrimidinedione
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
A | 0005737 | cellular_component | cytoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0009231 | biological_process | riboflavin biosynthetic process |
A | 0009349 | cellular_component | riboflavin synthase complex |
A | 0016740 | molecular_function | transferase activity |
B | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0005829 | cellular_component | cytosol |
B | 0009231 | biological_process | riboflavin biosynthetic process |
B | 0009349 | cellular_component | riboflavin synthase complex |
B | 0016740 | molecular_function | transferase activity |
C | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
C | 0005737 | cellular_component | cytoplasm |
C | 0005829 | cellular_component | cytosol |
C | 0009231 | biological_process | riboflavin biosynthetic process |
C | 0009349 | cellular_component | riboflavin synthase complex |
C | 0016740 | molecular_function | transferase activity |
D | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
D | 0005737 | cellular_component | cytoplasm |
D | 0005829 | cellular_component | cytosol |
D | 0009231 | biological_process | riboflavin biosynthetic process |
D | 0009349 | cellular_component | riboflavin synthase complex |
D | 0016740 | molecular_function | transferase activity |
E | 0000906 | molecular_function | 6,7-dimethyl-8-ribityllumazine synthase activity |
E | 0005737 | cellular_component | cytoplasm |
E | 0005829 | cellular_component | cytosol |
E | 0009231 | biological_process | riboflavin biosynthetic process |
E | 0009349 | cellular_component | riboflavin synthase complex |
E | 0016740 | molecular_function | transferase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE PO4 A 190 |
Chain | Residue |
A | ILE82 |
A | ASP83 |
A | GLY84 |
A | GLY85 |
A | ILE86 |
A | TYR87 |
site_id | AC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE PO4 B 191 |
Chain | Residue |
B | GLY85 |
B | ILE86 |
B | TYR87 |
B | ILE82 |
B | ASP83 |
B | GLY84 |
site_id | AC3 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE PO4 C 192 |
Chain | Residue |
C | ASP83 |
C | GLY84 |
C | GLY85 |
C | ILE86 |
C | TYR87 |
C | INI202 |
site_id | AC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE PO4 D 193 |
Chain | Residue |
D | ASP83 |
D | GLY84 |
D | GLY85 |
D | ILE86 |
D | TYR87 |
site_id | AC5 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE PO4 E 194 |
Chain | Residue |
E | ILE82 |
E | ASP83 |
E | GLY84 |
E | GLY85 |
E | ILE86 |
E | TYR87 |
E | INI201 |
site_id | AC6 |
Number of Residues | 13 |
Details | BINDING SITE FOR RESIDUE INI E 201 |
Chain | Residue |
D | LEU112 |
D | SER113 |
E | ALA20 |
E | TRP22 |
E | GLY55 |
E | ALA56 |
E | TYR57 |
E | GLU58 |
E | PHE80 |
E | VAL81 |
E | ILE82 |
E | PO4194 |
E | HOH2110 |
site_id | AC7 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE INI C 202 |
Chain | Residue |
B | LEU112 |
B | SER113 |
C | ALA20 |
C | TRP22 |
C | GLY55 |
C | ALA56 |
C | TYR57 |
C | GLU58 |
C | PHE80 |
C | VAL81 |
C | ILE82 |
C | PO4192 |
site_id | AC8 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE INI A 203 |
Chain | Residue |
A | ALA20 |
A | TRP22 |
A | GLY55 |
A | ALA56 |
A | TYR57 |
A | GLU58 |
A | PHE80 |
A | VAL81 |
A | ILE82 |
A | HOH2023 |
E | LEU112 |
E | SER113 |
site_id | AC9 |
Number of Residues | 11 |
Details | BINDING SITE FOR RESIDUE INI D 204 |
Chain | Residue |
C | LEU112 |
C | SER113 |
D | ALA20 |
D | TRP22 |
D | GLY55 |
D | ALA56 |
D | TYR57 |
D | GLU58 |
D | PHE80 |
D | VAL81 |
D | ILE82 |
site_id | BC1 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE INI B 205 |
Chain | Residue |
A | LEU112 |
A | SER113 |
B | ALA20 |
B | TRP22 |
B | GLY55 |
B | ALA56 |
B | TYR57 |
B | GLU58 |
B | PHE80 |
B | VAL81 |
B | ILE82 |
B | HOH2052 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 5 |
Details | ACT_SITE: Proton donor => ECO:0000255|HAMAP-Rule:MF_00178 |
Chain | Residue | Details |
A | ARG88 | |
B | ARG88 | |
C | ARG88 | |
D | ARG88 | |
E | ARG88 |
site_id | SWS_FT_FI2 |
Number of Residues | 25 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00178 |
Chain | Residue | Details |
A | TRP22 | |
B | HIS124 | |
C | TRP22 | |
C | ALA56 | |
C | PHE80 | |
C | SER113 | |
C | HIS124 | |
D | TRP22 | |
D | ALA56 | |
D | PHE80 | |
D | SER113 | |
A | ALA56 | |
D | HIS124 | |
E | TRP22 | |
E | ALA56 | |
E | PHE80 | |
E | SER113 | |
E | HIS124 | |
A | PHE80 | |
A | SER113 | |
A | HIS124 | |
B | TRP22 | |
B | ALA56 | |
B | PHE80 | |
B | SER113 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1rvv |
Chain | Residue | Details |
A | ARG88 |
site_id | CSA2 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1rvv |
Chain | Residue | Details |
B | ARG88 |
site_id | CSA3 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1rvv |
Chain | Residue | Details |
C | ARG88 |
site_id | CSA4 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1rvv |
Chain | Residue | Details |
D | ARG88 |
site_id | CSA5 |
Number of Residues | 1 |
Details | Annotated By Reference To The Literature 1rvv |
Chain | Residue | Details |
E | ARG88 |