1SG9
Crystal structure of Thermotoga maritima protein HEMK, an N5-glutamine methyltransferase
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003676 | molecular_function | nucleic acid binding |
A | 0006479 | biological_process | protein methylation |
A | 0008168 | molecular_function | methyltransferase activity |
A | 0008170 | molecular_function | N-methyltransferase activity |
A | 0008276 | molecular_function | protein methyltransferase activity |
A | 0008757 | molecular_function | S-adenosylmethionine-dependent methyltransferase activity |
A | 0032259 | biological_process | methylation |
A | 0036009 | molecular_function | protein-glutamine N-methyltransferase activity |
A | 0102559 | molecular_function | protein-(glutamine-N5) methyltransferase activity |
B | 0003676 | molecular_function | nucleic acid binding |
B | 0006479 | biological_process | protein methylation |
B | 0008168 | molecular_function | methyltransferase activity |
B | 0008170 | molecular_function | N-methyltransferase activity |
B | 0008276 | molecular_function | protein methyltransferase activity |
B | 0008757 | molecular_function | S-adenosylmethionine-dependent methyltransferase activity |
B | 0032259 | biological_process | methylation |
B | 0036009 | molecular_function | protein-glutamine N-methyltransferase activity |
B | 0102559 | molecular_function | protein-(glutamine-N5) methyltransferase activity |
C | 0003676 | molecular_function | nucleic acid binding |
C | 0006479 | biological_process | protein methylation |
C | 0008168 | molecular_function | methyltransferase activity |
C | 0008170 | molecular_function | N-methyltransferase activity |
C | 0008276 | molecular_function | protein methyltransferase activity |
C | 0008757 | molecular_function | S-adenosylmethionine-dependent methyltransferase activity |
C | 0032259 | biological_process | methylation |
C | 0036009 | molecular_function | protein-glutamine N-methyltransferase activity |
C | 0102559 | molecular_function | protein-(glutamine-N5) methyltransferase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 21 |
Details | BINDING SITE FOR RESIDUE SAM A 301 |
Chain | Residue |
A | PHE100 |
A | GLU179 |
A | PHE180 |
A | ASN197 |
A | GLU217 |
A | ALA218 |
A | GLN400 |
A | HOH401 |
A | HOH404 |
A | HOH405 |
A | HOH415 |
A | PRO102 |
A | HOH421 |
A | HOH444 |
A | THR106 |
A | ILE128 |
A | GLY129 |
A | THR130 |
A | ILE135 |
A | ASP151 |
A | VAL152 |
site_id | AC2 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE SAM B 302 |
Chain | Residue |
B | PHE100 |
B | PRO102 |
B | THR106 |
B | GLY129 |
B | THR130 |
B | ILE135 |
B | ASP151 |
B | VAL152 |
B | GLU179 |
B | PHE180 |
B | ASN197 |
B | GLU217 |
B | ALA218 |
B | GLN401 |
B | HOH405 |
B | HOH406 |
B | HOH408 |
B | HOH420 |
B | HOH468 |
site_id | AC3 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE SAM C 303 |
Chain | Residue |
C | PHE100 |
C | PRO102 |
C | GLY129 |
C | THR130 |
C | GLY131 |
C | ALA134 |
C | ASP151 |
C | GLU179 |
C | PHE180 |
C | ASN197 |
C | GLU217 |
C | ALA218 |
C | GLN402 |
C | HOH405 |
C | HOH407 |
C | HOH408 |
C | HOH410 |
C | HOH413 |
C | HOH414 |
site_id | AC4 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GLN A 400 |
Chain | Residue |
A | PHE100 |
A | ARG103 |
A | ASN197 |
A | PRO198 |
A | TYR200 |
A | SAM301 |
A | HOH496 |
site_id | AC5 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE GLN B 401 |
Chain | Residue |
B | PHE100 |
B | ARG103 |
B | ASN197 |
B | PRO198 |
B | TYR200 |
B | GLU246 |
B | SAM302 |
B | HOH416 |
B | HOH477 |
B | HOH478 |
site_id | AC6 |
Number of Residues | 7 |
Details | BINDING SITE FOR RESIDUE GLN C 402 |
Chain | Residue |
C | PHE100 |
C | ARG103 |
C | ASN197 |
C | PRO198 |
C | TYR200 |
C | SAM303 |
C | HOH416 |
Functional Information from PROSITE/UniProt
site_id | PS00092 |
Number of Residues | 7 |
Details | N6_MTASE N-6 Adenine-specific DNA methylases signature. ILSNPPY |
Chain | Residue | Details |
A | ILE194-TYR200 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 3 |
Details | BINDING: |
Chain | Residue | Details |
A | GLY129 | |
B | GLY129 | |
C | GLY129 |
site_id | SWS_FT_FI2 |
Number of Residues | 9 |
Details | BINDING: BINDING => ECO:0000269|PubMed:18247349, ECO:0000269|Ref.5 |
Chain | Residue | Details |
A | ASP151 | |
A | PHE180 | |
A | ASN197 | |
B | ASP151 | |
B | PHE180 | |
B | ASN197 | |
C | ASP151 | |
C | PHE180 | |
C | ASN197 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1qam |
Chain | Residue | Details |
A | ASP151 | |
A | ASN197 | |
A | GLY129 |
site_id | CSA2 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1qam |
Chain | Residue | Details |
B | ASP151 | |
B | ASN197 | |
B | GLY129 |
site_id | CSA3 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1qam |
Chain | Residue | Details |
C | ASP151 | |
C | ASN197 | |
C | GLY129 |
site_id | MCSA1 |
Number of Residues | 3 |
Details | M-CSA 703 |
Chain | Residue | Details |
A | PHE100 | electrostatic stabiliser |
A | ASN197 | electrostatic stabiliser |
A | PRO198 | electrostatic stabiliser |
site_id | MCSA2 |
Number of Residues | 3 |
Details | M-CSA 703 |
Chain | Residue | Details |
B | PHE100 | electrostatic stabiliser |
B | ASN197 | electrostatic stabiliser |
B | PRO198 | electrostatic stabiliser |
site_id | MCSA3 |
Number of Residues | 3 |
Details | M-CSA 703 |
Chain | Residue | Details |
C | PHE100 | electrostatic stabiliser |
C | ASN197 | electrostatic stabiliser |
C | PRO198 | electrostatic stabiliser |