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1S59

Structure of nucleoside diphosphate kinase 2 with bound dGTP from Arabidopsis

Functional Information from GO Data
ChainGOidnamespacecontents
A0004550molecular_functionnucleoside diphosphate kinase activity
A0006183biological_processGTP biosynthetic process
A0006228biological_processUTP biosynthetic process
A0006241biological_processCTP biosynthetic process
B0004550molecular_functionnucleoside diphosphate kinase activity
B0006183biological_processGTP biosynthetic process
B0006228biological_processUTP biosynthetic process
B0006241biological_processCTP biosynthetic process
C0004550molecular_functionnucleoside diphosphate kinase activity
C0006183biological_processGTP biosynthetic process
C0006228biological_processUTP biosynthetic process
C0006241biological_processCTP biosynthetic process
D0004550molecular_functionnucleoside diphosphate kinase activity
D0006183biological_processGTP biosynthetic process
D0006228biological_processUTP biosynthetic process
D0006241biological_processCTP biosynthetic process
E0004550molecular_functionnucleoside diphosphate kinase activity
E0006183biological_processGTP biosynthetic process
E0006228biological_processUTP biosynthetic process
E0006241biological_processCTP biosynthetic process
F0004550molecular_functionnucleoside diphosphate kinase activity
F0006183biological_processGTP biosynthetic process
F0006228biological_processUTP biosynthetic process
F0006241biological_processCTP biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE DGI A 1101
ChainResidue
APHE139
AARG167
ATHR173
AARG184
AASN194
AHOH1137
CGLU231

site_idAC2
Number of Residues13
DetailsBINDING SITE FOR RESIDUE DGT C 1102
ChainResidue
CTYR131
CLEU134
CPHE139
CTHR173
CARG184
CTHR191
CASN194
CVAL196
CHIS197
CGLY198
CHOH1117
BGLU231
CLYS91

Functional Information from PROSITE/UniProt
site_idPS00469
Number of Residues9
DetailsNDPK Nucleoside diphosphate kinase (NDPK) active site signature. NivHGSDSP
ChainResidueDetails
AASN194-PRO202

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsACT_SITE: Pros-phosphohistidine intermediate => ECO:0000250
ChainResidueDetails
AHIS197
BHIS197
CHIS197
DHIS197
EHIS197
FHIS197

site_idSWS_FT_FI2
Number of Residues36
DetailsBINDING:
ChainResidueDetails
ALYS91
BTHR173
BARG184
BASN194
CLYS91
CPHE139
CARG167
CTHR173
CARG184
CASN194
DLYS91
APHE139
DPHE139
DARG167
DTHR173
DARG184
DASN194
ELYS91
EPHE139
EARG167
ETHR173
EARG184
AARG167
EASN194
FLYS91
FPHE139
FARG167
FTHR173
FARG184
FASN194
ATHR173
AARG184
AASN194
BLYS91
BPHE139
BARG167

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1nsp
ChainResidueDetails
ALYS91
AASN194

site_idCSA10
Number of Residues2
DetailsAnnotated By Reference To The Literature 1nsp
ChainResidueDetails
DTYR131
DLYS91

site_idCSA11
Number of Residues2
DetailsAnnotated By Reference To The Literature 1nsp
ChainResidueDetails
ETYR131
ELYS91

site_idCSA12
Number of Residues2
DetailsAnnotated By Reference To The Literature 1nsp
ChainResidueDetails
FTYR131
FLYS91

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1nsp
ChainResidueDetails
BLYS91
BASN194

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 1nsp
ChainResidueDetails
CLYS91
CASN194

site_idCSA4
Number of Residues2
DetailsAnnotated By Reference To The Literature 1nsp
ChainResidueDetails
DLYS91
DASN194

site_idCSA5
Number of Residues2
DetailsAnnotated By Reference To The Literature 1nsp
ChainResidueDetails
ELYS91
EASN194

site_idCSA6
Number of Residues2
DetailsAnnotated By Reference To The Literature 1nsp
ChainResidueDetails
FLYS91
FASN194

site_idCSA7
Number of Residues2
DetailsAnnotated By Reference To The Literature 1nsp
ChainResidueDetails
ATYR131
ALYS91

site_idCSA8
Number of Residues2
DetailsAnnotated By Reference To The Literature 1nsp
ChainResidueDetails
BTYR131
BLYS91

site_idCSA9
Number of Residues2
DetailsAnnotated By Reference To The Literature 1nsp
ChainResidueDetails
CTYR131
CLYS91

222415

PDB entries from 2024-07-10

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