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1S32

Molecular Recognition of the Nucleosomal 'Supergroove'

Functional Information from GO Data
ChainGOidnamespacecontents
A0000786cellular_componentnucleosome
A0003677molecular_functionDNA binding
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005654cellular_componentnucleoplasm
A0005694cellular_componentchromosome
A0030527molecular_functionstructural constituent of chromatin
A0031492molecular_functionnucleosomal DNA binding
A0031507biological_processheterochromatin formation
A0046982molecular_functionprotein heterodimerization activity
B0000786cellular_componentnucleosome
B0003677molecular_functionDNA binding
B0005515molecular_functionprotein binding
B0005634cellular_componentnucleus
B0005694cellular_componentchromosome
B0006334biological_processnucleosome assembly
B0030527molecular_functionstructural constituent of chromatin
B0031507biological_processheterochromatin formation
B0046982molecular_functionprotein heterodimerization activity
C0000786cellular_componentnucleosome
C0003677molecular_functionDNA binding
C0005634cellular_componentnucleus
C0005694cellular_componentchromosome
C0030527molecular_functionstructural constituent of chromatin
C0031507biological_processheterochromatin formation
C0046982molecular_functionprotein heterodimerization activity
D0000786cellular_componentnucleosome
D0002227biological_processinnate immune response in mucosa
D0003677molecular_functionDNA binding
D0005515molecular_functionprotein binding
D0005615cellular_componentextracellular space
D0005634cellular_componentnucleus
D0005694cellular_componentchromosome
D0006325biological_processchromatin organization
D0019731biological_processantibacterial humoral response
D0030527molecular_functionstructural constituent of chromatin
D0031507biological_processheterochromatin formation
D0046982molecular_functionprotein heterodimerization activity
D0061844biological_processantimicrobial humoral immune response mediated by antimicrobial peptide
E0000786cellular_componentnucleosome
E0003677molecular_functionDNA binding
E0005515molecular_functionprotein binding
E0005634cellular_componentnucleus
E0005654cellular_componentnucleoplasm
E0005694cellular_componentchromosome
E0030527molecular_functionstructural constituent of chromatin
E0031492molecular_functionnucleosomal DNA binding
E0031507biological_processheterochromatin formation
E0046982molecular_functionprotein heterodimerization activity
F0000786cellular_componentnucleosome
F0003677molecular_functionDNA binding
F0005515molecular_functionprotein binding
F0005634cellular_componentnucleus
F0005694cellular_componentchromosome
F0006334biological_processnucleosome assembly
F0030527molecular_functionstructural constituent of chromatin
F0031507biological_processheterochromatin formation
F0046982molecular_functionprotein heterodimerization activity
G0000786cellular_componentnucleosome
G0003677molecular_functionDNA binding
G0005634cellular_componentnucleus
G0005694cellular_componentchromosome
G0030527molecular_functionstructural constituent of chromatin
G0031507biological_processheterochromatin formation
G0046982molecular_functionprotein heterodimerization activity
H0000786cellular_componentnucleosome
H0002227biological_processinnate immune response in mucosa
H0003677molecular_functionDNA binding
H0005515molecular_functionprotein binding
H0005615cellular_componentextracellular space
H0005634cellular_componentnucleus
H0005694cellular_componentchromosome
H0006325biological_processchromatin organization
H0019731biological_processantibacterial humoral response
H0030527molecular_functionstructural constituent of chromatin
H0031507biological_processheterochromatin formation
H0046982molecular_functionprotein heterodimerization activity
H0061844biological_processantimicrobial humoral immune response mediated by antimicrobial peptide
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN E 2001
ChainResidue
DVAL1245
EASP677
EHOH3391
EHOH3393
EHOH3394
FHOH3392

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MN J 2002
ChainResidue
JHOH3397
JHOH3398
JHOH3399
IHOH3396
JDG246
JHOH3395

site_idAC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MN I 2003
ChainResidue
IDG70
IDG71
IHOH3400

site_idAC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MN I 2004
ChainResidue
IDG134
IHOH3401
IHOH3402
IHOH3403

site_idAC5
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MN J 2005
ChainResidue
JDG280
JHOH3641

site_idAC6
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MN I 2006
ChainResidue
IDG100
IHOH3526
IHOH3832

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MN I 2007
ChainResidue
IDG39
IDG40
IHOH3153

site_idAC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MN J 2008
ChainResidue
JDT266
JDG267
JHOH3047
JHOH3411

site_idAC9
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MN I 2009
ChainResidue
IDG121

site_idBC1
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MN J 2010
ChainResidue
JDG217
JHOH3491

site_idBC2
Number of Residues1
DetailsBINDING SITE FOR RESIDUE MN J 2011
ChainResidue
JDG227

site_idBC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MN I 2012
ChainResidue
IHOH3821
JHOH3295
JHOH3820
JHOH3833

site_idBC4
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MN J 2013
ChainResidue
JDG185
JDG186
JHOH3499

site_idBC5
Number of Residues3
DetailsBINDING SITE FOR RESIDUE MN I 2014
ChainResidue
IDG137
IDG138
IHOH3233

site_idBC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL E 2015
ChainResidue
EPRO721
ELYS722

site_idBC7
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CL G 2016
ChainResidue
GGLY1044
GALA1045
GGLY1046
GALA1047
HTHR1487
HSER1488

site_idBC8
Number of Residues2
DetailsBINDING SITE FOR RESIDUE CL A 2017
ChainResidue
APRO521
ALYS522

site_idBC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CL D 2018
ChainResidue
CGLY846
CALA847
DTHR1287
DSER1288

site_idCC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE IMT I 1601
ChainResidue
IDG31
IDT32
IPYB1602
IPYB1608
IPYB1609

site_idCC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PYB I 1602
ChainResidue
IDT32
IDG33
IIMT1601
IIMT1603
IPYB1607
IPYB1608

site_idCC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE IMT I 1603
ChainResidue
IDG33
IDT34
IDA35
IPYB1602
IPYB1604

site_idCC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PYB I 1604
ChainResidue
IDT34
IDA35
IDT36
IIMT1603
IABU1605
IPYB1606
IHOH3243

site_idCC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ABU I 1605
ChainResidue
IPYB1604
IPYB1606
JDA259
JDC260
JOGG1700

site_idCC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PYB I 1606
ChainResidue
IPYB1604
IABU1605
IPYB1607
JDA259
JDC260
JDA261
JOGG1700

site_idCC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE PYB I 1607
ChainResidue
IPYB1602
IPYB1606
IPYB1608
JDC260
JDA261

site_idCC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PYB I 1608
ChainResidue
IIMT1601
IPYB1602
IPYB1607
IPYB1609
JDA261
JDC262
JDT263

site_idCC9
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PYB I 1609
ChainResidue
IDG31
IIMT1601
IPYB1608
IBAL1610
JDC262
JDT263

site_idDC1
Number of Residues5
DetailsBINDING SITE FOR RESIDUE BAL I 1610
ChainResidue
IDA30
IDG31
IPYB1609
IDIB1611
JDT263

site_idDC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE DIB I 1611
ChainResidue
IDA29
IDA30
IBAL1610
JDT265
JDT266

site_idDC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE IMT I 1621
ChainResidue
IPYB1622
IPYB1628
IPYB1629
JDT178

site_idDC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE PYB I 1622
ChainResidue
IIMT1621
IIMT1623
IPYB1627
IPYB1628
JDT178
JDG179

site_idDC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE IMT I 1623
ChainResidue
IPYB1622
IPYB1624
IPYB1627
JDG179
JDT180
JDA181

site_idDC6
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PYB I 1624
ChainResidue
IDA113
IIMT1623
IABU1625
IPYB1626
JDT180
JDA181
JDT182

site_idDC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE ABU I 1625
ChainResidue
IDA113
IPYB1624
IPYB1626
JDA181
JOGG1700

site_idDC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PYB I 1626
ChainResidue
IDA113
IDC114
IDA115
IPYB1624
IABU1625
IPYB1627
JOGG1700

site_idDC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PYB I 1627
ChainResidue
IDC114
IDA115
IDC116
IPYB1622
IIMT1623
IPYB1626
IPYB1628

site_idEC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE PYB I 1628
ChainResidue
IDA115
IDC116
IDT117
IIMT1621
IPYB1622
IPYB1627
IPYB1629

site_idEC2
Number of Residues8
DetailsBINDING SITE FOR RESIDUE PYB I 1629
ChainResidue
GLYS1013
IDC116
IDT117
IDT118
IIMT1621
IPYB1628
IBAL1630
JDG177

site_idEC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE BAL I 1630
ChainResidue
GALA1014
IPYB1629
IDIB1631
JDA176
JDG177

site_idEC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE DIB I 1631
ChainResidue
IDT119
IDT120
IBAL1630
JDA175
JDA176

site_idEC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE OGG J 1700
ChainResidue
IDA113
IABU1605
IPYB1606
IABU1625
IPYB1626
JDA259

Functional Information from PROSITE/UniProt
site_idPS00046
Number of Residues7
DetailsHISTONE_H2A Histone H2A signature. AGLqFPV
ChainResidueDetails
CALA821-VAL827

site_idPS00047
Number of Residues5
DetailsHISTONE_H4 Histone H4 signature. GAKRH
ChainResidueDetails
BGLY14-HIS18

site_idPS00322
Number of Residues7
DetailsHISTONE_H3_1 Histone H3 signature 1. KAPRKQL
ChainResidueDetails
ALYS414-LEU420

site_idPS00357
Number of Residues23
DetailsHISTONE_H2B Histone H2B signature. REIQTavRlLLpGELaKHAVSEG
ChainResidueDetails
DARG1289-GLY1311

site_idPS00959
Number of Residues9
DetailsHISTONE_H3_2 Histone H3 signature 2. PFqRLVREI
ChainResidueDetails
APRO466-ILE474

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsModified residue: {"description":"Phosphotyrosine","evidences":[{"source":"UniProtKB","id":"Q71DI3","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues4
DetailsModified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"UniProtKB","id":"P84228","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"Q71DI3","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsModified residue: {"description":"N6-methyllysine; alternate","evidences":[{"source":"UniProtKB","id":"Q71DI3","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues4
DetailsModified residue: {"description":"Phosphothreonine","evidences":[{"source":"UniProtKB","id":"Q71DI3","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"UniProtKB","id":"P84243","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues2
DetailsModified residue: {"description":"N6-glutaryllysine; alternate","evidences":[{"source":"UniProtKB","id":"Q71DI3","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues2
DetailsModified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"UniProtKB","id":"Q71DI3","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI9
Number of Residues2
DetailsLipidation: {"description":"S-palmitoyl cysteine","evidences":[{"source":"UniProtKB","id":"Q71DI3","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI10
Number of Residues1
DetailsModified residue: {"description":"N6-methyllysine","evidences":[{"source":"UniProtKB","id":"P68431","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI12
Number of Residues4
DetailsModified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI13
Number of Residues5
DetailsModified residue: {"description":"N6-propionyllysine; alternate","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI14
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine; by PAK2","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI15
Number of Residues4
DetailsModified residue: {"description":"Phosphotyrosine","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI16
Number of Residues2
DetailsModified residue: {"description":"N6-glutaryllysine; alternate","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI17
Number of Residues2
DetailsModified residue: {"description":"N6-succinyllysine","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI18
Number of Residues2
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in UFM1); alternate","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI19
Number of Residues4
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI20
Number of Residues4
DetailsDNA binding: {}
ChainResidueDetails

site_idSWS_FT_FI21
Number of Residues1
DetailsModified residue: {"description":"N6-methyllysine; alternate","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI22
Number of Residues2
DetailsModified residue: {"description":"N6-(2-hydroxyisobutyryl)lysine; alternate","evidences":[{"source":"UniProtKB","id":"P0C0S8","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI23
Number of Residues4
DetailsModified residue: {"description":"N6-(2-hydroxyisobutyryl)lysine","evidences":[{"source":"UniProtKB","id":"P0C0S8","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI24
Number of Residues2
DetailsModified residue: {"description":"N6-succinyllysine","evidences":[{"source":"UniProtKB","id":"P0C0S8","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI25
Number of Residues2
DetailsModified residue: {"description":"N5-methylglutamine","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI26
Number of Residues2
DetailsModified residue: {"description":"N6-glutaryllysine; alternate","evidences":[{"source":"UniProtKB","id":"P0C0S8","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI27
Number of Residues7
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI28
Number of Residues2
DetailsGlycosylation: {"description":"O-linked (GlcNAc) serine","evidences":[{"source":"UniProtKB","id":"P62807","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI29
Number of Residues4
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"UniProtKB","id":"P0C1H4","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

246031

PDB entries from 2025-12-10

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