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1RYS

REPLICATION OF A CIS-SYN THYMINE DIMER AT ATOMIC RESOLUTION

Replaces:  1PM8
Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0003677molecular_functionDNA binding
A0003684molecular_functiondamaged DNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
A0006974biological_processDNA damage response
A0009432biological_processSOS response
A0016740molecular_functiontransferase activity
A0016779molecular_functionnucleotidyltransferase activity
A0042276biological_processerror-prone translesion synthesis
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0003677molecular_functionDNA binding
B0003684molecular_functiondamaged DNA binding
B0003887molecular_functionDNA-directed DNA polymerase activity
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006260biological_processDNA replication
B0006261biological_processDNA-templated DNA replication
B0006281biological_processDNA repair
B0006974biological_processDNA damage response
B0009432biological_processSOS response
B0016740molecular_functiontransferase activity
B0016779molecular_functionnucleotidyltransferase activity
B0042276biological_processerror-prone translesion synthesis
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 801
ChainResidue
AASP7
APHE8
AASP105
AATP1814
AHOH1945
AHOH2060

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CA A 802
ChainResidue
AHOH1881
AHOH1935
AHOH2058
AASP105
AATP1814
AHOH1826

site_idAC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE CA B 803
ChainResidue
BASP7
BPHE8
BASP105
BATP1815

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE CA C 805
ChainResidue
AASP294
AHOH1862
AHOH1920
AHOH1933
AHOH2003
AHOH2029
CDT1811

site_idAC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE CA B 806
ChainResidue
BALA181
BILE186
BHOH1836
BHOH1854
BHOH1910
BHOH2008
EHOH151
EHOH298

site_idAC6
Number of Residues21
DetailsBINDING SITE FOR RESIDUE ATP A 1814
ChainResidue
AASP7
ATYR10
ATHR45
AARG51
AASP105
ALYS159
ACA801
ACA802
AHOH1881
AHOH1902
AHOH1945
AHOH1956
AHOH1981
AHOH2015
AHOH2017
AHOH2030
AHOH2048
AHOH2059
AHOH2060
CDA1814
DDT1904

site_idAC7
Number of Residues23
DetailsBINDING SITE FOR RESIDUE ATP B 1815
ChainResidue
BPHE8
BASP9
BTYR10
BPHE11
BTYR12
BALA44
BTHR45
BTYR48
BARG51
BALA57
BGLY58
BASP105
BLYS159
BCA803
BHOH1817
BHOH1823
BHOH1879
BHOH1944
BHOH2062
EHOH657
EDA1814
FEDO1204
FDT1904

site_idAC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE EDO F 1204
ChainResidue
BTYR12
BMET76
BATP1815
FHOH598
FHOH706
FDT1904
FDT1905

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE:
ChainResidueDetails
AGLU106
BGLU106

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING:
ChainResidueDetails
AASP7
AASP105
BASP7
BASP105

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Substrate discrimination
ChainResidueDetails
ATYR12
BTYR12

218853

PDB entries from 2024-04-24

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