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1RSC

STRUCTURE OF AN EFFECTOR INDUCED INACTIVATED STATE OF RIBULOSE BISPHOSPHATE CARBOXYLASE(SLASH)OXYGENASE: THE BINARY COMPLEX BETWEEN ENZYME AND XYLULOSE BISPHOSPHATE

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0004497molecular_functionmonooxygenase activity
A0005515molecular_functionprotein binding
A0009853biological_processphotorespiration
A0015977biological_processcarbon fixation
A0015979biological_processphotosynthesis
A0016491molecular_functionoxidoreductase activity
A0016829molecular_functionlyase activity
A0016984molecular_functionribulose-bisphosphate carboxylase activity
A0019253biological_processreductive pentose-phosphate cycle
A0031470cellular_componentcarboxysome
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0004497molecular_functionmonooxygenase activity
B0005515molecular_functionprotein binding
B0009853biological_processphotorespiration
B0015977biological_processcarbon fixation
B0015979biological_processphotosynthesis
B0016491molecular_functionoxidoreductase activity
B0016829molecular_functionlyase activity
B0016984molecular_functionribulose-bisphosphate carboxylase activity
B0019253biological_processreductive pentose-phosphate cycle
B0031470cellular_componentcarboxysome
B0046872molecular_functionmetal ion binding
C0000287molecular_functionmagnesium ion binding
C0004497molecular_functionmonooxygenase activity
C0005515molecular_functionprotein binding
C0009853biological_processphotorespiration
C0015977biological_processcarbon fixation
C0015979biological_processphotosynthesis
C0016491molecular_functionoxidoreductase activity
C0016829molecular_functionlyase activity
C0016984molecular_functionribulose-bisphosphate carboxylase activity
C0019253biological_processreductive pentose-phosphate cycle
C0031470cellular_componentcarboxysome
C0046872molecular_functionmetal ion binding
D0000287molecular_functionmagnesium ion binding
D0004497molecular_functionmonooxygenase activity
D0005515molecular_functionprotein binding
D0009853biological_processphotorespiration
D0015977biological_processcarbon fixation
D0015979biological_processphotosynthesis
D0016491molecular_functionoxidoreductase activity
D0016829molecular_functionlyase activity
D0016984molecular_functionribulose-bisphosphate carboxylase activity
D0019253biological_processreductive pentose-phosphate cycle
D0031470cellular_componentcarboxysome
D0046872molecular_functionmetal ion binding
E0000287molecular_functionmagnesium ion binding
E0004497molecular_functionmonooxygenase activity
E0005515molecular_functionprotein binding
E0009853biological_processphotorespiration
E0015977biological_processcarbon fixation
E0015979biological_processphotosynthesis
E0016491molecular_functionoxidoreductase activity
E0016829molecular_functionlyase activity
E0016984molecular_functionribulose-bisphosphate carboxylase activity
E0019253biological_processreductive pentose-phosphate cycle
E0031470cellular_componentcarboxysome
E0046872molecular_functionmetal ion binding
F0000287molecular_functionmagnesium ion binding
F0004497molecular_functionmonooxygenase activity
F0005515molecular_functionprotein binding
F0009853biological_processphotorespiration
F0015977biological_processcarbon fixation
F0015979biological_processphotosynthesis
F0016491molecular_functionoxidoreductase activity
F0016829molecular_functionlyase activity
F0016984molecular_functionribulose-bisphosphate carboxylase activity
F0019253biological_processreductive pentose-phosphate cycle
F0031470cellular_componentcarboxysome
F0046872molecular_functionmetal ion binding
G0000287molecular_functionmagnesium ion binding
G0004497molecular_functionmonooxygenase activity
G0005515molecular_functionprotein binding
G0009853biological_processphotorespiration
G0015977biological_processcarbon fixation
G0015979biological_processphotosynthesis
G0016491molecular_functionoxidoreductase activity
G0016829molecular_functionlyase activity
G0016984molecular_functionribulose-bisphosphate carboxylase activity
G0019253biological_processreductive pentose-phosphate cycle
G0031470cellular_componentcarboxysome
G0046872molecular_functionmetal ion binding
H0000287molecular_functionmagnesium ion binding
H0004497molecular_functionmonooxygenase activity
H0005515molecular_functionprotein binding
H0009853biological_processphotorespiration
H0015977biological_processcarbon fixation
H0015979biological_processphotosynthesis
H0016491molecular_functionoxidoreductase activity
H0016829molecular_functionlyase activity
H0016984molecular_functionribulose-bisphosphate carboxylase activity
H0019253biological_processreductive pentose-phosphate cycle
H0031470cellular_componentcarboxysome
H0046872molecular_functionmetal ion binding
I0009853biological_processphotorespiration
I0015977biological_processcarbon fixation
I0015979biological_processphotosynthesis
I0016984molecular_functionribulose-bisphosphate carboxylase activity
I0019253biological_processreductive pentose-phosphate cycle
I0031470cellular_componentcarboxysome
J0009853biological_processphotorespiration
J0015977biological_processcarbon fixation
J0015979biological_processphotosynthesis
J0016984molecular_functionribulose-bisphosphate carboxylase activity
J0019253biological_processreductive pentose-phosphate cycle
J0031470cellular_componentcarboxysome
K0009853biological_processphotorespiration
K0015977biological_processcarbon fixation
K0015979biological_processphotosynthesis
K0016984molecular_functionribulose-bisphosphate carboxylase activity
K0019253biological_processreductive pentose-phosphate cycle
K0031470cellular_componentcarboxysome
L0009853biological_processphotorespiration
L0015977biological_processcarbon fixation
L0015979biological_processphotosynthesis
L0016984molecular_functionribulose-bisphosphate carboxylase activity
L0019253biological_processreductive pentose-phosphate cycle
L0031470cellular_componentcarboxysome
M0009853biological_processphotorespiration
M0015977biological_processcarbon fixation
M0015979biological_processphotosynthesis
M0016984molecular_functionribulose-bisphosphate carboxylase activity
M0019253biological_processreductive pentose-phosphate cycle
M0031470cellular_componentcarboxysome
N0009853biological_processphotorespiration
N0015977biological_processcarbon fixation
N0015979biological_processphotosynthesis
N0016984molecular_functionribulose-bisphosphate carboxylase activity
N0019253biological_processreductive pentose-phosphate cycle
N0031470cellular_componentcarboxysome
O0009853biological_processphotorespiration
O0015977biological_processcarbon fixation
O0015979biological_processphotosynthesis
O0016984molecular_functionribulose-bisphosphate carboxylase activity
O0019253biological_processreductive pentose-phosphate cycle
O0031470cellular_componentcarboxysome
P0009853biological_processphotorespiration
P0015977biological_processcarbon fixation
P0015979biological_processphotosynthesis
P0016984molecular_functionribulose-bisphosphate carboxylase activity
P0019253biological_processreductive pentose-phosphate cycle
P0031470cellular_componentcarboxysome
Functional Information from PDB Data
site_id1P
Number of Residues4
Details
ChainResidue
ALYS334
AGLY381
AGLY403
AGLY404

site_id1P2
Number of Residues4
Details
ChainResidue
BLYS334
BGLY381
BGLY403
BGLY404

site_id1P3
Number of Residues4
Details
ChainResidue
CLYS334
CGLY381
CGLY403
CGLY404

site_id1P4
Number of Residues4
Details
ChainResidue
DLYS334
DGLY381
DGLY403
DGLY404

site_id1P5
Number of Residues4
Details
ChainResidue
ELYS334
EGLY381
EGLY403
EGLY404

site_id1P6
Number of Residues4
Details
ChainResidue
FLYS334
FGLY381
FGLY403
FGLY404

site_id1P7
Number of Residues4
Details
ChainResidue
GLYS334
GGLY381
GGLY403
GGLY404

site_id1P8
Number of Residues4
Details
ChainResidue
HLYS334
HGLY381
HGLY403
HGLY404

site_id2P
Number of Residues3
Details
ChainResidue
AHIS327
AARG295
ASER379

site_id2P2
Number of Residues3
Details
ChainResidue
BHIS327
BARG295
BSER379

site_id2P3
Number of Residues3
Details
ChainResidue
CHIS327
CARG295
CSER379

site_id2P4
Number of Residues3
Details
ChainResidue
DHIS327
DARG295
DSER379

site_id2P6
Number of Residues3
Details
ChainResidue
FHIS327
FARG295
FSER379

site_id2P7
Number of Residues3
Details
ChainResidue
GHIS327
GARG295
GSER379

site_id3P5
Number of Residues3
Details
ChainResidue
EHIS327
EARG295
ESER379

site_id3P8
Number of Residues3
Details
ChainResidue
HHIS327
HARG295
HSER379

site_idAC1
Number of Residues25
DetailsBINDING SITE FOR RESIDUE XBP A 476
ChainResidue
ALYS175
ALYS177
AASP203
AGLU204
AHIS294
AARG295
AHIS327
ALYS334
ALEU335
ASER379
AGLY380
AGLY381
AGLY403
AGLY404
AHOH496
AHOH588
AHOH589
AHOH590
AHOH598
AHOH599
BGLU60
BTHR65
BTRP66
BASN123
BHOH477

site_idAC2
Number of Residues20
DetailsBINDING SITE FOR RESIDUE XBP B 476
ChainResidue
AGLU60
ATHR65
ATRP66
AASN123
AHOH615
BLYS175
BLYS177
BASP203
BGLU204
BHIS294
BARG295
BHIS327
BLYS334
BLEU335
BSER379
BGLY380
BGLY381
BGLY403
BGLY404
BHOH479

site_idAC3
Number of Residues18
DetailsBINDING SITE FOR RESIDUE XBP C 476
ChainResidue
CLYS175
CLYS177
CASP203
CGLU204
CHIS294
CARG295
CHIS327
CLYS334
CLEU335
CSER379
CGLY380
CGLY381
CGLY403
CGLY404
DGLU60
DTHR65
DTRP66
DASN123

site_idAC4
Number of Residues18
DetailsBINDING SITE FOR RESIDUE XBP D 476
ChainResidue
CGLU60
CTHR65
CTRP66
CASN123
DLYS175
DLYS177
DASP203
DGLU204
DHIS294
DARG295
DHIS327
DLYS334
DLEU335
DSER379
DGLY380
DGLY381
DGLY403
DGLY404

site_idAC5
Number of Residues18
DetailsBINDING SITE FOR RESIDUE XBP E 476
ChainResidue
ELYS175
ELYS177
EASP203
EGLU204
EHIS294
EARG295
EHIS327
ELYS334
ELEU335
ESER379
EGLY380
EGLY381
EGLY403
EGLY404
FGLU60
FTHR65
FTRP66
FASN123

site_idAC6
Number of Residues18
DetailsBINDING SITE FOR RESIDUE XBP F 476
ChainResidue
EGLU60
ETHR65
ETRP66
EASN123
FLYS175
FLYS177
FASP203
FGLU204
FHIS294
FARG295
FHIS327
FLYS334
FLEU335
FSER379
FGLY380
FGLY381
FGLY403
FGLY404

site_idAC7
Number of Residues18
DetailsBINDING SITE FOR RESIDUE XBP G 476
ChainResidue
GLYS175
GLYS177
GASP203
GGLU204
GHIS294
GARG295
GHIS327
GLYS334
GLEU335
GSER379
GGLY380
GGLY381
GGLY403
GGLY404
HGLU60
HTHR65
HTRP66
HASN123

site_idAC8
Number of Residues18
DetailsBINDING SITE FOR RESIDUE XBP H 476
ChainResidue
GGLU60
GTHR65
GTRP66
GASN123
HLYS175
HLYS177
HASP203
HGLU204
HHIS294
HARG295
HHIS327
HLYS334
HLEU335
HSER379
HGLY380
HGLY381
HGLY403
HGLY404

site_idBP2
Number of Residues6
Details
ChainResidue
BLYS175
BASP203
BGLU204
BHIS294
BLYS334
BSER379

site_idBP3
Number of Residues6
Details
ChainResidue
CLYS175
CASP203
CGLU204
CHIS294
CLYS334
CSER379

site_idBP4
Number of Residues6
Details
ChainResidue
DLYS175
DASP203
DGLU204
DHIS294
DLYS334
DSER379

site_idBP5
Number of Residues6
Details
ChainResidue
ELYS175
EASP203
EGLU204
EHIS294
ELYS334
ESER379

site_idBP6
Number of Residues6
Details
ChainResidue
FLYS175
FASP203
FGLU204
FHIS294
FLYS334
FSER379

site_idBP7
Number of Residues6
Details
ChainResidue
GLYS175
GASP203
GGLU204
GHIS294
GLYS334
GSER379

site_idBP8
Number of Residues6
Details
ChainResidue
HASP203
HGLU204
HHIS294
HLYS334
HSER379
HLYS175

site_idXBP
Number of Residues6
Details
ChainResidue
AGLU204
AHIS294
ALYS334
ASER379
ALYS175
AASP203

Functional Information from PROSITE/UniProt
site_idPS00157
Number of Residues9
DetailsRUBISCO_LARGE Ribulose bisphosphate carboxylase large chain active site. GlDFtKdDE
ChainResidueDetails
AGLY196-GLU204

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues48
DetailsMotif: {"description":"Interacts with RbcX2","evidences":[{"source":"PubMed","id":"17574029","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues16
DetailsActive site: {"description":"Proton acceptor"}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues8
DetailsBinding site: {"description":"in homodimeric partner"}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues40
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues8
DetailsBinding site: {"description":"via carbamate group","evidences":[{"source":"PubMed","id":"8245022","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues16
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"8245022","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues8
DetailsSite: {"description":"Transition state stabilizer"}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues8
DetailsModified residue: {"description":"N6-carboxylysine","evidences":[{"source":"PubMed","id":"16593333","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI9
Number of Residues72
DetailsRegion: {"description":"Hydrophobic"}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues6
DetailsAnnotated By Reference To The Literature 1rbl
ChainResidueDetails
ALYS175
ALYS201
ALYS177
AHIS294
AASP203
AHIS327

site_idCSA2
Number of Residues6
DetailsAnnotated By Reference To The Literature 1rbl
ChainResidueDetails
BLYS175
BLYS201
BLYS177
BHIS294
BASP203
BHIS327

site_idCSA3
Number of Residues6
DetailsAnnotated By Reference To The Literature 1rbl
ChainResidueDetails
CLYS175
CLYS201
CLYS177
CHIS294
CASP203
CHIS327

site_idCSA4
Number of Residues6
DetailsAnnotated By Reference To The Literature 1rbl
ChainResidueDetails
DLYS175
DLYS201
DLYS177
DHIS294
DASP203
DHIS327

site_idCSA5
Number of Residues6
DetailsAnnotated By Reference To The Literature 1rbl
ChainResidueDetails
ELYS175
ELYS201
ELYS177
EHIS294
EASP203
EHIS327

site_idCSA6
Number of Residues6
DetailsAnnotated By Reference To The Literature 1rbl
ChainResidueDetails
FLYS175
FLYS201
FLYS177
FHIS294
FASP203
FHIS327

site_idCSA7
Number of Residues6
DetailsAnnotated By Reference To The Literature 1rbl
ChainResidueDetails
GLYS175
GLYS201
GLYS177
GHIS294
GASP203
GHIS327

site_idCSA8
Number of Residues6
DetailsAnnotated By Reference To The Literature 1rbl
ChainResidueDetails
HLYS175
HLYS201
HLYS177
HHIS294
HASP203
HHIS327

site_idMCSA1
Number of Residues6
DetailsM-CSA 907
ChainResidueDetails
ALYS175electrostatic stabiliser, metal ligand, proton donor
ALYS201metal ligand, nucleophile, proton donor
AASP203metal ligand
AGLU204metal ligand
AHIS294proton acceptor
ALYS334electrostatic stabiliser

site_idMCSA2
Number of Residues6
DetailsM-CSA 907
ChainResidueDetails
CLYS175electrostatic stabiliser, metal ligand, proton donor
CLYS201metal ligand, nucleophile, proton donor
CASP203metal ligand
CGLU204metal ligand
CHIS294proton acceptor
CLYS334electrostatic stabiliser

site_idMCSA3
Number of Residues6
DetailsM-CSA 907
ChainResidueDetails
ELYS175electrostatic stabiliser, metal ligand, proton donor
ELYS201metal ligand, nucleophile, proton donor
EASP203metal ligand
EGLU204metal ligand
EHIS294proton acceptor
ELYS334electrostatic stabiliser

site_idMCSA4
Number of Residues6
DetailsM-CSA 907
ChainResidueDetails
GLYS175electrostatic stabiliser, metal ligand, proton donor
GLYS201metal ligand, nucleophile, proton donor
GASP203metal ligand
GGLU204metal ligand
GHIS294proton acceptor
GLYS334electrostatic stabiliser

site_idMCSA5
Number of Residues6
DetailsM-CSA 907
ChainResidueDetails

site_idMCSA6
Number of Residues6
DetailsM-CSA 907
ChainResidueDetails

site_idMCSA7
Number of Residues6
DetailsM-CSA 907
ChainResidueDetails

site_idMCSA8
Number of Residues6
DetailsM-CSA 907
ChainResidueDetails

246704

PDB entries from 2025-12-24

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