Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1RM5

Crystal structure of mutant S188A of photosynthetic glyceraldehyde-3-phosphate dehydrogenase A4 isoform, complexed with NADP

Functional Information from GO Data
ChainGOidnamespacecontents
A0006006biological_processglucose metabolic process
A0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
A0050661molecular_functionNADP binding
A0051287molecular_functionNAD binding
B0006006biological_processglucose metabolic process
B0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
B0050661molecular_functionNADP binding
B0051287molecular_functionNAD binding
O0006006biological_processglucose metabolic process
O0016620molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
O0050661molecular_functionNADP binding
O0051287molecular_functionNAD binding
Functional Information from PDB Data
site_idAC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 O 7338
ChainResidue
OTHR179
OASP181
OARG195
OARG231
ONDP7335
OHOH7367
OHOH7448

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 O 7339
ChainResidue
OGLY209
OALA210
OHOH7408
OHOH7471
OHOH7535
OSER148
OTHR208

site_idAC3
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 1338
ChainResidue
ATHR179
AASP181
AARG195
ANDP1335
AHOH1402

site_idAC4
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 1339
ChainResidue
ASER148
ATHR150
ATHR208
AGLY209
AHOH1422
AHOH1453

site_idAC5
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 B 2338
ChainResidue
BTHR179
BASP181
BARG195
BARG231
BNDP2335
BHOH2438
BHOH2472

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 B 2339
ChainResidue
BSER148
BTHR150
BTHR208
BGLY209
BHOH2433
BHOH2453

site_idAC7
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 A 901
ChainResidue
AGLU253
AASN256
AARG260

site_idAC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 O 902
ChainResidue
ALYS72
AHOH1352
OPHE251
OALA252
OVAL299
OHOH7370
OHOH7459

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE SO4 A 903
ChainResidue
AGLY36
AVAL37
ALYS38
AHOH1374

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE SO4 B 904
ChainResidue
BSER247
BLYS248
BLYS249

site_idBC2
Number of Residues22
DetailsBINDING SITE FOR RESIDUE NDP O 7335
ChainResidue
OGLY9
OARG10
OILE11
OTHR33
OARG77
OGLY95
OTHR96
OGLY97
OPHE99
OTHR119
OALA120
OASN313
OSO47338
OHOH7354
OHOH7356
OHOH7357
OHOH7358
OHOH7368
OHOH7450
OHOH7506
OHOH7546
OHOH7548

site_idBC3
Number of Residues20
DetailsBINDING SITE FOR RESIDUE NDP A 1335
ChainResidue
AGLY9
AARG10
AILE11
ATHR33
AARG77
AGLY95
ATHR96
AGLY97
ATHR119
AALA120
AASN313
ATYR317
ASO41338
AHOH1345
AHOH1354
AHOH1356
AHOH1402
AHOH1404
AHOH1444
BHOH2357

site_idBC4
Number of Residues20
DetailsBINDING SITE FOR RESIDUE NDP B 2335
ChainResidue
BARG10
BILE11
BASN31
BTHR33
BARG77
BTHR96
BGLY97
BTHR119
BALA120
BASN313
BTYR317
BSO42338
BHOH2366
BHOH2375
BHOH2385
BHOH2429
BHOH2470
BHOH2472
AHOH1361
BGLY9

Functional Information from PROSITE/UniProt
site_idPS00071
Number of Residues8
DetailsGAPDH Glyceraldehyde 3-phosphate dehydrogenase active site. ASCTTNcL
ChainResidueDetails
OALA147-LEU154

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsACT_SITE: Nucleophile
ChainResidueDetails
OCYS149
ACYS149
BCYS149

site_idSWS_FT_FI2
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|PubMed:11846565, ECO:0000269|PubMed:12705826, ECO:0000269|PubMed:15236965, ECO:0000269|PubMed:17573533
ChainResidueDetails
OARG10
BASP32
BARG77
BASN313
OASP32
OARG77
OASN313
AARG10
AASP32
AARG77
AASN313
BARG10

site_idSWS_FT_FI3
Number of Residues15
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
OSER148
AARG231
BSER148
BTHR179
BARG195
BTHR208
BARG231
OTHR179
OARG195
OTHR208
OARG231
ASER148
ATHR179
AARG195
ATHR208

site_idSWS_FT_FI4
Number of Residues3
DetailsSITE: Activates thiol group during catalysis => ECO:0000250
ChainResidueDetails
OHIS176
AHIS176
BHIS176

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1szj
ChainResidueDetails
OCYS149
OHIS176

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1szj
ChainResidueDetails
ACYS149
AHIS176

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 1szj
ChainResidueDetails
BCYS149
BHIS176

224201

PDB entries from 2024-08-28

PDB statisticsPDBj update infoContact PDBjnumon