1RM4
Crystal structure of recombinant photosynthetic glyceraldehyde-3-phosphate dehydrogenase A4 isoform, complexed with NADP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0006006 | biological_process | glucose metabolic process |
| A | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
| A | 0050661 | molecular_function | NADP binding |
| A | 0051287 | molecular_function | NAD binding |
| B | 0006006 | biological_process | glucose metabolic process |
| B | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
| B | 0050661 | molecular_function | NADP binding |
| B | 0051287 | molecular_function | NAD binding |
| O | 0006006 | biological_process | glucose metabolic process |
| O | 0016620 | molecular_function | oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor |
| O | 0050661 | molecular_function | NADP binding |
| O | 0051287 | molecular_function | NAD binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE SO4 O 7338 |
| Chain | Residue |
| O | THR179 |
| O | ASP181 |
| O | ARG195 |
| O | ARG231 |
| O | NDP7335 |
| O | HOH7357 |
| O | HOH7453 |
| O | HOH7460 |
| O | HOH7594 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 O 7339 |
| Chain | Residue |
| O | SER148 |
| O | CYS149 |
| O | THR150 |
| O | THR208 |
| O | HOH7391 |
| site_id | AC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 A 1338 |
| Chain | Residue |
| A | THR179 |
| A | ASP181 |
| A | ARG195 |
| A | ARG231 |
| A | NDP1335 |
| A | HOH1395 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 A 1339 |
| Chain | Residue |
| A | SER148 |
| A | THR208 |
| A | GLY209 |
| A | ALA210 |
| A | HOH1356 |
| A | HOH1396 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 B 2338 |
| Chain | Residue |
| B | THR179 |
| B | ASP181 |
| B | ARG195 |
| B | ARG231 |
| B | NDP2335 |
| B | HOH2402 |
| site_id | AC6 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 B 2339 |
| Chain | Residue |
| B | SER148 |
| B | THR150 |
| B | THR208 |
| B | GLY209 |
| B | ALA210 |
| B | HOH2388 |
| site_id | AC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 A 901 |
| Chain | Residue |
| A | GLY36 |
| A | VAL37 |
| A | LYS38 |
| A | HOH1341 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 B 902 |
| Chain | Residue |
| A | LEU201 |
| A | ARG284 |
| A | HOH1459 |
| A | HOH1464 |
| B | ARG284 |
| B | HOH2366 |
| site_id | AC9 |
| Number of Residues | 29 |
| Details | BINDING SITE FOR RESIDUE NDP O 7335 |
| Chain | Residue |
| O | GLY7 |
| O | PHE8 |
| O | GLY9 |
| O | ARG10 |
| O | ILE11 |
| O | ASN31 |
| O | ASP76 |
| O | ARG77 |
| O | GLY95 |
| O | THR96 |
| O | GLY97 |
| O | PHE99 |
| O | THR119 |
| O | ALA120 |
| O | ARG183 |
| O | SER188 |
| O | ASN313 |
| O | GLU314 |
| O | TYR317 |
| O | SO47338 |
| O | HOH7348 |
| O | HOH7367 |
| O | HOH7372 |
| O | HOH7424 |
| O | HOH7430 |
| O | HOH7532 |
| O | HOH7533 |
| O | HOH7535 |
| O | HOH7570 |
| site_id | BC1 |
| Number of Residues | 27 |
| Details | BINDING SITE FOR RESIDUE NDP A 1335 |
| Chain | Residue |
| A | HOH1425 |
| A | HOH1457 |
| A | HOH1479 |
| A | HOH1480 |
| B | SER188 |
| A | GLY7 |
| A | ARG10 |
| A | ILE11 |
| A | ASN31 |
| A | THR33 |
| A | ARG77 |
| A | GLY95 |
| A | THR96 |
| A | GLY97 |
| A | PHE99 |
| A | THR119 |
| A | ALA120 |
| A | ASN313 |
| A | TYR317 |
| A | SO41338 |
| A | HOH1343 |
| A | HOH1346 |
| A | HOH1348 |
| A | HOH1353 |
| A | HOH1358 |
| A | HOH1395 |
| A | HOH1417 |
| site_id | BC2 |
| Number of Residues | 20 |
| Details | BINDING SITE FOR RESIDUE NDP B 2335 |
| Chain | Residue |
| A | SER188 |
| B | GLY7 |
| B | GLY9 |
| B | ARG10 |
| B | ILE11 |
| B | ARG77 |
| B | GLY95 |
| B | THR96 |
| B | GLY97 |
| B | THR119 |
| B | ALA120 |
| B | ASN313 |
| B | GLU314 |
| B | TYR317 |
| B | SO42338 |
| B | HOH2359 |
| B | HOH2368 |
| B | HOH2402 |
| B | HOH2404 |
| B | HOH2442 |
Functional Information from PROSITE/UniProt
| site_id | PS00071 |
| Number of Residues | 8 |
| Details | GAPDH Glyceraldehyde 3-phosphate dehydrogenase active site. ASCTTNcL |
| Chain | Residue | Details |
| O | ALA147-LEU154 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 3 |
| Details | ACT_SITE: Nucleophile |
| Chain | Residue | Details |
| O | CYS149 | |
| A | CYS149 | |
| B | CYS149 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 12 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:11846565, ECO:0000269|PubMed:12705826, ECO:0000269|PubMed:15236965, ECO:0000269|PubMed:17573533 |
| Chain | Residue | Details |
| O | ASN313 | |
| A | ARG10 | |
| A | ASP32 | |
| A | ARG77 | |
| A | ASN313 | |
| B | ARG10 | |
| B | ASP32 | |
| B | ARG77 | |
| B | ASN313 | |
| O | ARG10 | |
| O | ASP32 | |
| O | ARG77 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 15 |
| Details | BINDING: BINDING => ECO:0000250 |
| Chain | Residue | Details |
| A | THR179 | |
| A | ARG195 | |
| A | THR208 | |
| A | ARG231 | |
| B | SER148 | |
| B | THR179 | |
| B | ARG195 | |
| B | THR208 | |
| B | ARG231 | |
| O | SER148 | |
| O | THR179 | |
| O | ARG195 | |
| O | THR208 | |
| O | ARG231 | |
| A | SER148 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 3 |
| Details | SITE: Activates thiol group during catalysis => ECO:0000250 |
| Chain | Residue | Details |
| O | HIS176 | |
| A | HIS176 | |
| B | HIS176 |
