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1RKX

Crystal Structure at 1.8 Angstrom of CDP-D-glucose 4,6-dehydratase from Yersinia pseudotuberculosis

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0016829molecular_functionlyase activity
A0047733molecular_functionCDP-glucose 4,6-dehydratase activity
B0000166molecular_functionnucleotide binding
B0016829molecular_functionlyase activity
B0047733molecular_functionCDP-glucose 4,6-dehydratase activity
C0000166molecular_functionnucleotide binding
C0016829molecular_functionlyase activity
C0047733molecular_functionCDP-glucose 4,6-dehydratase activity
D0000166molecular_functionnucleotide binding
D0016829molecular_functionlyase activity
D0047733molecular_functionCDP-glucose 4,6-dehydratase activity
Functional Information from PDB Data
site_idAC1
Number of Residues35
DetailsBINDING SITE FOR RESIDUE NAD A 360
ChainResidue
AGLY16
AILE66
AARG67
AMET87
AALA88
AALA89
APRO91
ATHR106
AILE130
ATHR131
ASER132
ATHR18
ATYR157
ALYS161
AALA193
AGLY194
AASN195
AVAL196
AHOH362
AHOH386
AHOH392
AHOH426
AGLY19
AHOH429
AHOH442
AHOH476
AHOH487
AHOH498
AHOH552
APHE20
ALYS21
ASER40
ALEU41
AGLY64
AASP65

site_idAC2
Number of Residues36
DetailsBINDING SITE FOR RESIDUE NAD B 360
ChainResidue
BGLY16
BTHR18
BGLY19
BPHE20
BLYS21
BSER40
BLEU41
BGLY64
BASP65
BILE66
BARG67
BMET87
BALA88
BALA89
BPRO91
BTHR106
BILE130
BTHR131
BSER132
BTYR157
BLYS161
BALA193
BGLY194
BASN195
BVAL196
BARG206
BHOH380
BHOH397
BHOH415
BHOH461
BHOH476
BHOH487
BHOH520
BHOH525
BHOH529
BHOH544

site_idAC3
Number of Residues32
DetailsBINDING SITE FOR RESIDUE NAD C 360
ChainResidue
CHOH440
CHOH442
CHOH494
CHOH517
CGLY16
CTHR18
CGLY19
CPHE20
CLYS21
CSER40
CLEU41
CGLY64
CASP65
CILE66
CARG67
CMET87
CALA88
CALA89
CPRO91
CTHR106
CILE130
CTHR131
CSER132
CTYR157
CLYS161
CALA193
CGLY194
CASN195
CVAL196
CHOH369
CHOH372
CHOH396

site_idAC4
Number of Residues28
DetailsBINDING SITE FOR RESIDUE NAD D 360
ChainResidue
DGLY16
DTHR18
DGLY19
DPHE20
DLYS21
DSER40
DLEU41
DGLY64
DASP65
DILE66
DARG67
DMET87
DALA88
DALA89
DPRO91
DTHR106
DILE130
DTHR131
DSER132
DTYR157
DLYS161
DALA193
DGLY194
DASN195
DVAL196
DARG206
DHOH371
DHOH381

Catalytic Information from CSA
site_idCSA1
Number of Residues3
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
ALYS161
ATYR157
ASER132

site_idCSA10
Number of Residues2
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
BTYR154
BLYS161

site_idCSA11
Number of Residues2
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
CTYR154
CLYS161

site_idCSA12
Number of Residues2
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
DTYR154
DLYS161

site_idCSA13
Number of Residues2
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
ALYS161
ATYR157

site_idCSA14
Number of Residues2
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
BLYS161
BTYR157

site_idCSA15
Number of Residues2
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
CLYS161
CTYR157

site_idCSA16
Number of Residues2
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
DLYS161
DTYR157

site_idCSA2
Number of Residues3
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
BLYS161
BTYR157
BSER132

site_idCSA3
Number of Residues3
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
CLYS161
CTYR157
CSER132

site_idCSA4
Number of Residues3
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
DLYS161
DTYR157
DSER132

site_idCSA5
Number of Residues4
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
AASN107
ALYS161
ATYR157
ASER132

site_idCSA6
Number of Residues4
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
BASN107
BLYS161
BTYR157
BSER132

site_idCSA7
Number of Residues4
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
CASN107
CLYS161
CTYR157
CSER132

site_idCSA8
Number of Residues4
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
DASN107
DLYS161
DTYR157
DSER132

site_idCSA9
Number of Residues2
DetailsAnnotated By Reference To The Literature 1eq2
ChainResidueDetails
ATYR154
ALYS161

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PDB entries from 2024-08-28

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