1RJN
The Crystal Structure of MenB (Rv0548c) from Mycobacterium tuberculosis in Complex with the CoA Portion of Naphthoyl CoA
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005886 | cellular_component | plasma membrane |
A | 0008935 | molecular_function | 1,4-dihydroxy-2-naphthoyl-CoA synthase activity |
A | 0009234 | biological_process | menaquinone biosynthetic process |
A | 0016829 | molecular_function | lyase activity |
A | 0034214 | biological_process | protein hexamerization |
B | 0005886 | cellular_component | plasma membrane |
B | 0008935 | molecular_function | 1,4-dihydroxy-2-naphthoyl-CoA synthase activity |
B | 0009234 | biological_process | menaquinone biosynthetic process |
B | 0016829 | molecular_function | lyase activity |
B | 0034214 | biological_process | protein hexamerization |
C | 0005886 | cellular_component | plasma membrane |
C | 0008935 | molecular_function | 1,4-dihydroxy-2-naphthoyl-CoA synthase activity |
C | 0009234 | biological_process | menaquinone biosynthetic process |
C | 0016829 | molecular_function | lyase activity |
C | 0034214 | biological_process | protein hexamerization |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE COA B 1210 |
Chain | Residue |
B | VAL57 |
B | ARG58 |
B | LYS95 |
B | SER103 |
B | GLY105 |
B | ASP106 |
B | GLN107 |
B | TRP157 |
site_id | AC2 |
Number of Residues | 27 |
Details | BINDING SITE FOR RESIDUE EP1 B 1211 |
Chain | Residue |
A | ARG202 |
A | GLN203 |
A | VAL204 |
A | GLY205 |
A | PHE208 |
A | MET227 |
A | GLY228 |
B | ALA201 |
B | ARG202 |
B | GLN203 |
B | VAL204 |
B | GLY205 |
B | GLN226 |
B | MET227 |
B | HOH1219 |
B | HOH1229 |
B | HOH1238 |
C | ALA201 |
C | ARG202 |
C | GLN203 |
C | VAL204 |
C | GLY205 |
C | PHE208 |
C | GLN226 |
C | MET227 |
C | HOH321 |
A | ALA201 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 3 |
Details | BINDING: in other chain => ECO:0000255|HAMAP-Rule:MF_01934, ECO:0000269|PubMed:12909628, ECO:0000269|PubMed:21830810 |
Chain | Residue | Details |
A | ARG58 | |
B | ARG58 | |
C | ARG58 |
site_id | SWS_FT_FI2 |
Number of Residues | 3 |
Details | BINDING: in other chain => ECO:0000269|PubMed:12909628, ECO:0000269|PubMed:21830810 |
Chain | Residue | Details |
A | LYS95 | |
B | LYS95 | |
C | LYS95 |
site_id | SWS_FT_FI3 |
Number of Residues | 3 |
Details | BINDING: in other chain => ECO:0000255|HAMAP-Rule:MF_01934, ECO:0000269|PubMed:12909628, ECO:0000269|PubMed:16131752, ECO:0000269|PubMed:21830810 |
Chain | Residue | Details |
A | SER103 | |
B | SER103 | |
C | SER103 |
site_id | SWS_FT_FI4 |
Number of Residues | 3 |
Details | BINDING: in other chain => ECO:0000250|UniProtKB:P0ABU0, ECO:0000255|HAMAP-Rule:MF_01934 |
Chain | Residue | Details |
A | TYR115 | |
B | TYR115 | |
C | TYR115 |
site_id | SWS_FT_FI5 |
Number of Residues | 6 |
Details | BINDING: in other chain => ECO:0000255|HAMAP-Rule:MF_01934, ECO:0000269|PubMed:12909628 |
Chain | Residue | Details |
A | TRP157 | |
A | THR184 | |
B | TRP157 | |
B | THR184 | |
C | TRP157 | |
C | THR184 |
site_id | SWS_FT_FI6 |
Number of Residues | 3 |
Details | BINDING: in other chain => ECO:0000255|HAMAP-Rule:MF_01934, ECO:0000305|PubMed:21830810 |
Chain | Residue | Details |
A | SER190 | |
B | SER190 | |
C | SER190 |
site_id | SWS_FT_FI7 |
Number of Residues | 6 |
Details | BINDING: BINDING => ECO:0000250|UniProtKB:P0ABU0, ECO:0000255|HAMAP-Rule:MF_01934 |
Chain | Residue | Details |
A | TYR287 | |
A | LYS302 | |
B | TYR287 | |
B | LYS302 | |
C | TYR287 | |
C | LYS302 |
site_id | SWS_FT_FI8 |
Number of Residues | 3 |
Details | SITE: Important for catalysis => ECO:0000250|UniProtKB:P0ABU0, ECO:0000255|HAMAP-Rule:MF_01934 |
Chain | Residue | Details |
A | TYR115 | |
B | TYR115 | |
C | TYR115 |
site_id | SWS_FT_FI9 |
Number of Residues | 3 |
Details | SITE: Important for catalysis => ECO:0000255|HAMAP-Rule:MF_01934, ECO:0000305|PubMed:20643650, ECO:0000305|PubMed:21830810 |
Chain | Residue | Details |
A | ASP185 | |
B | ASP185 | |
C | ASP185 |
site_id | SWS_FT_FI10 |
Number of Residues | 3 |
Details | SITE: Important for catalysis => ECO:0000250|UniProtKB:P0ABU0, ECO:0000255|HAMAP-Rule:MF_01934, ECO:0000305|PubMed:12909628 |
Chain | Residue | Details |
A | TYR287 | |
B | TYR287 | |
C | TYR287 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1dci |
Chain | Residue | Details |
A | ASP192 | |
A | ASP185 |
site_id | CSA2 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1dci |
Chain | Residue | Details |
B | ASP192 | |
B | ASP185 |
site_id | CSA3 |
Number of Residues | 2 |
Details | Annotated By Reference To The Literature 1dci |
Chain | Residue | Details |
C | ASP192 | |
C | ASP185 |
site_id | MCSA1 |
Number of Residues | 6 |
Details | M-CSA 346 |
Chain | Residue | Details |
A | GLY105 | electrostatic stabiliser, hydrogen bond donor |
A | TYR115 | electrostatic stabiliser, hydrogen bond donor, steric role |
A | GLY161 | electrostatic stabiliser, hydrogen bond donor |
A | ASP185 | activator |
A | SER190 | activator |
A | TYR287 | electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, polar interaction, proton acceptor, proton donor, steric role |
site_id | MCSA2 |
Number of Residues | 6 |
Details | M-CSA 346 |
Chain | Residue | Details |
B | GLY105 | electrostatic stabiliser, hydrogen bond donor |
B | TYR115 | electrostatic stabiliser, hydrogen bond donor, steric role |
B | GLY161 | electrostatic stabiliser, hydrogen bond donor |
B | ASP185 | activator |
B | SER190 | activator |
B | TYR287 | electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, polar interaction, proton acceptor, proton donor, steric role |
site_id | MCSA3 |
Number of Residues | 6 |
Details | M-CSA 346 |
Chain | Residue | Details |
C | GLY105 | electrostatic stabiliser, hydrogen bond donor |
C | TYR115 | electrostatic stabiliser, hydrogen bond donor, steric role |
C | GLY161 | electrostatic stabiliser, hydrogen bond donor |
C | ASP185 | activator |
C | SER190 | activator |
C | TYR287 | electrostatic stabiliser, hydrogen bond acceptor, hydrogen bond donor, polar interaction, proton acceptor, proton donor, steric role |