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1RF6

Structural Studies of Streptococcus pneumoniae EPSP Synthase in S3P-GLP Bound State

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0003866molecular_function3-phosphoshikimate 1-carboxyvinyltransferase activity
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0008652biological_processamino acid biosynthetic process
A0009073biological_processaromatic amino acid family biosynthetic process
A0009423biological_processchorismate biosynthetic process
A0016740molecular_functiontransferase activity
A0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
B0003824molecular_functioncatalytic activity
B0003866molecular_function3-phosphoshikimate 1-carboxyvinyltransferase activity
B0005515molecular_functionprotein binding
B0005737cellular_componentcytoplasm
B0008652biological_processamino acid biosynthetic process
B0009073biological_processaromatic amino acid family biosynthetic process
B0009423biological_processchorismate biosynthetic process
B0016740molecular_functiontransferase activity
B0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
C0003824molecular_functioncatalytic activity
C0003866molecular_function3-phosphoshikimate 1-carboxyvinyltransferase activity
C0005515molecular_functionprotein binding
C0005737cellular_componentcytoplasm
C0008652biological_processamino acid biosynthetic process
C0009073biological_processaromatic amino acid family biosynthetic process
C0009423biological_processchorismate biosynthetic process
C0016740molecular_functiontransferase activity
C0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
D0003824molecular_functioncatalytic activity
D0003866molecular_function3-phosphoshikimate 1-carboxyvinyltransferase activity
D0005515molecular_functionprotein binding
D0005737cellular_componentcytoplasm
D0008652biological_processamino acid biosynthetic process
D0009073biological_processaromatic amino acid family biosynthetic process
D0009423biological_processchorismate biosynthetic process
D0016740molecular_functiontransferase activity
D0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
Functional Information from PDB Data
site_idAC1
Number of Residues15
DetailsBINDING SITE FOR RESIDUE GPJ A 1428
ChainResidue
ALYS20
AHIS384
AARG385
AS3P1429
AHOH1430
AHOH1462
AHOH1483
AASN90
AGLY92
ATHR93
AARG120
AGLN168
AASP312
AGLU340
AARG343

site_idAC2
Number of Residues16
DetailsBINDING SITE FOR RESIDUE S3P A 1429
ChainResidue
ALYS20
ASER21
AARG25
ATHR93
ASER166
AALA167
AGLN168
AILE311
AASP312
ALYS339
AGPJ1428
AHOH1448
AHOH1483
AHOH1499
AHOH1515
AHOH1542

site_idAC3
Number of Residues14
DetailsBINDING SITE FOR RESIDUE GPJ B 1528
ChainResidue
BLYS20
BASN90
BGLY92
BTHR93
BARG120
BGLN168
BASP312
BGLU340
BARG343
BHIS384
BARG385
BS3P1529
BHOH1530
BHOH1582

site_idAC4
Number of Residues15
DetailsBINDING SITE FOR RESIDUE S3P B 1529
ChainResidue
BLYS20
BSER21
BARG25
BTHR93
BSER166
BALA167
BGLN168
BASP312
BLYS339
BGPJ1528
BHOH1556
BHOH1575
BHOH1582
BHOH1612
BHOH1614

site_idAC5
Number of Residues15
DetailsBINDING SITE FOR RESIDUE GPJ C 1628
ChainResidue
CLYS20
CASN90
CGLY92
CTHR93
CARG120
CGLN168
CASP312
CGLU340
CARG343
CHIS384
CARG385
CS3P1629
CHOH1630
CHOH1644
CHOH1718

site_idAC6
Number of Residues16
DetailsBINDING SITE FOR RESIDUE S3P C 1629
ChainResidue
CLYS20
CSER21
CARG25
CTHR93
CSER166
CALA167
CGLN168
CARG193
CASP312
CLYS339
CGPJ1628
CHOH1657
CHOH1661
CHOH1706
CHOH1718
CHOH1763

site_idAC7
Number of Residues15
DetailsBINDING SITE FOR RESIDUE GPJ D 1728
ChainResidue
DARG343
DHIS384
DARG385
DS3P1729
DHOH1730
DHOH1756
DHOH1787
DLYS20
DASN90
DGLY92
DTHR93
DARG120
DGLN168
DASP312
DGLU340

site_idAC8
Number of Residues15
DetailsBINDING SITE FOR RESIDUE S3P D 1729
ChainResidue
DLYS20
DSER21
DARG25
DTHR93
DSER166
DALA167
DGLN168
DARG193
DASP312
DLYS339
DGPJ1728
DHOH1756
DHOH1759
DHOH1776
DHOH1814

Functional Information from PROSITE/UniProt
site_idPS00104
Number of Residues15
DetailsEPSP_SYNTHASE_1 EPSP synthase signature 1. LNmGNSGTSIRlIsG
ChainResidueDetails
ALEU86-GLY100

site_idPS00885
Number of Residues19
DetailsEPSP_SYNTHASE_2 EPSP synthase signature 2. KvKETDRIqVVadaLnsMG
ChainResidueDetails
ALYS337-GLY355

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"HAMAP-Rule","id":"MF_00210","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"14763973","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues24
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00210","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues24
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"14763973","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1RF6","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

243911

PDB entries from 2025-10-29

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