| Chain | GOid | namespace | contents |
| A | 0000502 | cellular_component | proteasome complex |
| A | 0005515 | molecular_function | protein binding |
| A | 0005524 | molecular_function | ATP binding |
| A | 0005634 | cellular_component | nucleus |
| A | 0005654 | cellular_component | nucleoplasm |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005783 | cellular_component | endoplasmic reticulum |
| A | 0005789 | cellular_component | endoplasmic reticulum membrane |
| A | 0005811 | cellular_component | lipid droplet |
| A | 0005829 | cellular_component | cytosol |
| A | 0006281 | biological_process | DNA repair |
| A | 0006302 | biological_process | double-strand break repair |
| A | 0006511 | biological_process | ubiquitin-dependent protein catabolic process |
| A | 0006734 | biological_process | NADH metabolic process |
| A | 0006888 | biological_process | endoplasmic reticulum to Golgi vesicle-mediated transport |
| A | 0006914 | biological_process | autophagy |
| A | 0006974 | biological_process | DNA damage response |
| A | 0008289 | molecular_function | lipid binding |
| A | 0010494 | cellular_component | cytoplasmic stress granule |
| A | 0010498 | biological_process | proteasomal protein catabolic process |
| A | 0010918 | biological_process | positive regulation of mitochondrial membrane potential |
| A | 0016236 | biological_process | macroautophagy |
| A | 0016567 | biological_process | protein ubiquitination |
| A | 0016787 | molecular_function | hydrolase activity |
| A | 0016887 | molecular_function | ATP hydrolysis activity |
| A | 0019079 | biological_process | viral genome replication |
| A | 0019903 | molecular_function | protein phosphatase binding |
| A | 0019904 | molecular_function | protein domain specific binding |
| A | 0019985 | biological_process | translesion synthesis |
| A | 0030970 | biological_process | retrograde protein transport, ER to cytosol |
| A | 0031334 | biological_process | positive regulation of protein-containing complex assembly |
| A | 0031593 | molecular_function | polyubiquitin modification-dependent protein binding |
| A | 0031625 | molecular_function | ubiquitin protein ligase binding |
| A | 0032436 | biological_process | positive regulation of proteasomal ubiquitin-dependent protein catabolic process |
| A | 0032510 | biological_process | endosome to lysosome transport via multivesicular body sorting pathway |
| A | 0032991 | cellular_component | protein-containing complex |
| A | 0033554 | biological_process | cellular response to stress |
| A | 0034098 | cellular_component | VCP-NPL4-UFD1 AAA ATPase complex |
| A | 0034605 | biological_process | cellular response to heat |
| A | 0035331 | biological_process | negative regulation of hippo signaling |
| A | 0035617 | biological_process | stress granule disassembly |
| A | 0035800 | molecular_function | deubiquitinase activator activity |
| A | 0035861 | cellular_component | site of double-strand break |
| A | 0036297 | biological_process | interstrand cross-link repair |
| A | 0036435 | molecular_function | K48-linked polyubiquitin modification-dependent protein binding |
| A | 0036503 | biological_process | ERAD pathway |
| A | 0036513 | cellular_component | Derlin-1 retrotranslocation complex |
| A | 0042288 | molecular_function | MHC class I protein binding |
| A | 0042802 | molecular_function | identical protein binding |
| A | 0043161 | biological_process | proteasome-mediated ubiquitin-dependent protein catabolic process |
| A | 0043209 | cellular_component | myelin sheath |
| A | 0043531 | molecular_function | ADP binding |
| A | 0044389 | molecular_function | ubiquitin-like protein ligase binding |
| A | 0044877 | molecular_function | protein-containing complex binding |
| A | 0045202 | cellular_component | synapse |
| A | 0045732 | biological_process | positive regulation of protein catabolic process |
| A | 0045879 | biological_process | negative regulation of smoothened signaling pathway |
| A | 0046034 | biological_process | ATP metabolic process |
| A | 0048471 | cellular_component | perinuclear region of cytoplasm |
| A | 0050807 | biological_process | regulation of synapse organization |
| A | 0061857 | biological_process | endoplasmic reticulum stress-induced pre-emptive quality control |
| A | 0070842 | biological_process | aggresome assembly |
| A | 0071218 | biological_process | cellular response to misfolded protein |
| A | 0072389 | biological_process | flavin adenine dinucleotide catabolic process |
| A | 0090263 | biological_process | positive regulation of canonical Wnt signaling pathway |
| A | 0097352 | biological_process | autophagosome maturation |
| A | 0098978 | cellular_component | glutamatergic synapse |
| A | 0106300 | biological_process | protein-DNA covalent cross-linking repair |
| A | 0120186 | biological_process | negative regulation of protein localization to chromatin |
| A | 0140036 | molecular_function | ubiquitin-modified protein reader activity |
| A | 0140455 | biological_process | cytoplasm protein quality control |
| A | 1901224 | biological_process | positive regulation of non-canonical NF-kappaB signal transduction |
| A | 1903006 | biological_process | positive regulation of protein K63-linked deubiquitination |
| A | 1903007 | biological_process | positive regulation of Lys63-specific deubiquitinase activity |
| A | 1903715 | biological_process | regulation of aerobic respiration |
| A | 1903843 | biological_process | cellular response to arsenite ion |
| A | 1903862 | biological_process | positive regulation of oxidative phosphorylation |
| A | 1904288 | molecular_function | BAT3 complex binding |
| A | 1904949 | cellular_component | ATPase complex |
| A | 1905634 | biological_process | regulation of protein localization to chromatin |
| A | 1990381 | molecular_function | ubiquitin-specific protease binding |
| A | 1990730 | cellular_component | VCP-NSFL1C complex |
| A | 2000060 | biological_process | positive regulation of ubiquitin-dependent protein catabolic process |
| A | 2001171 | biological_process | positive regulation of ATP biosynthetic process |
