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1R66

Crystal Structure of DesIV (dTDP-glucose 4,6-dehydratase) from Streptomyces venezuelae with NAD and TYD bound

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0008460molecular_functiondTDP-glucose 4,6-dehydratase activity
A0009225biological_processnucleotide-sugar metabolic process
A0016491molecular_functionoxidoreductase activity
A0016829molecular_functionlyase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE CL A 902
ChainResidue
APRO144
APRO144
ALEU145
ALEU145
AHOH667
AHOH667

site_idAC2
Number of Residues35
DetailsBINDING SITE FOR RESIDUE NAD A 900
ChainResidue
AILE12
AASP37
ASER38
ALEU39
ATHR40
AALA42
AGLY43
AGLY62
AASP63
AILE64
APHE83
AALA84
AALA85
ASER87
ATHR102
AVAL125
ASER126
ATYR151
ALYS155
ACYS178
ACYS179
AASN180
AASN181
AHOH407
AHOH414
AHOH417
AHOH434
AHOH440
AHOH442
AHOH449
AHOH556
AHOH564
AALA9
AGLY10
APHE11

site_idAC3
Number of Residues18
DetailsBINDING SITE FOR RESIDUE TYD A 901
ChainResidue
AHIS88
AVAL89
AGLU129
AASN180
AGLU189
ALYS190
ALEU191
ALEU194
APRO206
ATYR208
AARG215
AASN250
AARG274
AHIS277
AHOH412
AHOH415
AHOH447
AHOH477

Functional Information from PROSITE/UniProt
site_idPS00061
Number of Residues29
DetailsADH_SHORT Short-chain dehydrogenases/reductases family signature. SwtessplepNspYAASKAGSdLVArAYH
ChainResidueDetails
ASER138-HIS166

Catalytic Information from CSA
site_idCSA1
Number of Residues4
DetailsAnnotated By Reference To The Literature 1db3
ChainResidueDetails
ALYS155
ATYR151
ATHR127
AGLU129

site_idCSA2
Number of Residues3
DetailsAnnotated By Reference To The Literature 1db3
ChainResidueDetails
ALYS155
ATYR151
ATHR127

site_idCSA3
Number of Residues4
DetailsAnnotated By Reference To The Literature 1db3
ChainResidueDetails
AASN103
ALYS155
ATYR151
ATHR127

site_idCSA4
Number of Residues2
DetailsAnnotated By Reference To The Literature 1db3
ChainResidueDetails
ALYS155
AASN148

site_idCSA5
Number of Residues2
DetailsAnnotated By Reference To The Literature 1db3
ChainResidueDetails
ALYS155
ATYR151

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PDB entries from 2024-10-09

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