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1QWM

Structure of Helicobacter pylori catalase with formic acid bound

Functional Information from GO Data
ChainGOidnamespacecontents
A0004096molecular_functioncatalase activity
A0004601molecular_functionperoxidase activity
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0006979biological_processresponse to oxidative stress
A0020037molecular_functionheme binding
A0042542biological_processresponse to hydrogen peroxide
A0042744biological_processhydrogen peroxide catabolic process
A0046872molecular_functionmetal ion binding
A0098869biological_processcellular oxidant detoxification
B0004096molecular_functioncatalase activity
B0004601molecular_functionperoxidase activity
B0005515molecular_functionprotein binding
B0005737cellular_componentcytoplasm
B0006979biological_processresponse to oxidative stress
B0020037molecular_functionheme binding
B0042542biological_processresponse to hydrogen peroxide
B0042744biological_processhydrogen peroxide catabolic process
B0046872molecular_functionmetal ion binding
B0098869biological_processcellular oxidant detoxification
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE AZI A 2600
ChainResidue
AARG47
AARG344
AFMT1713
AFMT1735
BARG47
BTYR345

site_idAC2
Number of Residues27
DetailsBINDING SITE FOR RESIDUE HEM A 550
ChainResidue
AVAL55
AHIS56
AARG93
AGLY112
AVAL127
AGLY128
AASN129
AALA139
APHE142
AGLY197
ASER198
AHIS199
APHE315
AMET331
AARG335
ASER338
ATYR339
ATHR342
AHIS343
AARG346
AFMT1701
AHOH2606
AHOH2629
AHOH2668
AASP46
AARG53
AVAL54

site_idAC3
Number of Residues28
DetailsBINDING SITE FOR RESIDUE HEM B 550
ChainResidue
BASP46
BARG53
BVAL54
BVAL55
BHIS56
BARG93
BGLY112
BPHE113
BALA114
BVAL127
BGLY128
BASN129
BALA139
BPHE142
BGLY197
BSER198
BPHE315
BMET331
BARG335
BSER338
BTYR339
BTHR342
BHIS343
BARG346
BFMT1702
BHOH1739
BHOH1745
BHOH1792

site_idAC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT A 1701
ChainResidue
AHIS56
AASN129
APHE134
APHE142
AHEM550

site_idAC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT B 1702
ChainResidue
BHIS56
BVAL97
BASN129
BPHE134
BHEM550

site_idAC6
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FMT B 1703
ChainResidue
BARG108
BASP109
BPRO110
BPHE135
BGLN149
BVAL180

site_idAC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT A 1704
ChainResidue
AGLN149
AVAL163
ATRP167
AMET181
AHOH3041

site_idAC8
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FMT B 1705
ChainResidue
BGLN149
BPRO158
BVAL163
BFMT1707
BHOH1827
BHOH2015
BHOH2224

site_idAC9
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FMT A 1706
ChainResidue
APRO158
AHIS160
AHOH2784
AHOH2855

site_idBC1
Number of Residues3
DetailsBINDING SITE FOR RESIDUE FMT B 1707
ChainResidue
BFMT1705
BHOH1977
BHOH2112

site_idBC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FMT B 1708
ChainResidue
BHIS454
BHOH1817
BHOH1986
BHIS160
BGLU450
BSER451

site_idBC3
Number of Residues6
DetailsBINDING SITE FOR RESIDUE FMT A 1709
ChainResidue
AASP183
AARG184
AVAL223
AGLU440
AHOH2717
AHOH2732

site_idBC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE FMT A 1710
ChainResidue
ALYS58
AARG101
AGLY102
AARG151
AASN156
AFMT1734
AHOH2845
AHOH2890

site_idBC5
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT A 1711
ChainResidue
ALYS150
AARG151
AHOH2607
AHOH2652
AHOH3040

site_idBC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE FMT B 1712
ChainResidue
BALA57
BLYS58
BGLY59
BARG101
BTYR306
BGLU311
BFMT1720
BHOH2207

site_idBC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT A 1713
ChainResidue
AARG47
ATYR345
AAZI2600
AHOH2654
BARG344

site_idBC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT A 1714
ChainResidue
AASN130
ATRP179
AARG184
AASP194
AHOH2694

site_idBC9
Number of Residues2
DetailsBINDING SITE FOR RESIDUE FMT A 1715
ChainResidue
ATYR371
BTYR371

site_idCC1
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FMT A 1716
ChainResidue
APRO352
AGLN353
APRO359
APHE363
AHOH2791
AHOH2860
BALA11

site_idCC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE FMT B 1717
ChainResidue
BTYR285
BTHR286
BHOH2133

site_idCC3
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FMT A 1718
ChainResidue
APHE247
AALA251
AASN302
AHOH2725

site_idCC4
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT A 1719
ChainResidue
ALYS77
AGLY323
ASER396
AALA397
AARG398

site_idCC5
Number of Residues8
DetailsBINDING SITE FOR RESIDUE FMT B 1720
ChainResidue
BLYS58
BARG101
BGLY102
BARG151
BASN156
BFMT1712
BHOH2050
BHOH2207

site_idCC6
Number of Residues8
DetailsBINDING SITE FOR RESIDUE FMT B 1721
ChainResidue
AHOH2634
BARG49
BARG101
BHOH1801
BHOH1916
BHOH2050
BHOH2085
BHOH2177

site_idCC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FMT A 1722
ChainResidue
AASP194
AHIS218
ATHR219
AHOH2928

site_idCC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FMT A 1723
ChainResidue
AVAL223
ALYS224
AHOH2688
AHOH2978

site_idCC9
Number of Residues3
DetailsBINDING SITE FOR RESIDUE FMT A 1724
ChainResidue
ALYS188
AHOH2688
AHOH2925

site_idDC1
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FMT A 1725
ChainResidue
ALYS188
ALEU226
AHOH2925
AHOH2956

site_idDC2
Number of Residues3
DetailsBINDING SITE FOR RESIDUE FMT B 1726
ChainResidue
BVAL223
BLYS224
BHOH1830

site_idDC3
Number of Residues3
DetailsBINDING SITE FOR RESIDUE FMT B 1727
ChainResidue
BASP183
BHIS225
BGLU440

site_idDC4
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FMT B 1728
ChainResidue
BLYS188
BLYS224
BHOH1830
BHOH2143

site_idDC5
Number of Residues9
DetailsBINDING SITE FOR RESIDUE FMT B 1729
ChainResidue
BSER182
BASP183
BARG184
BTYR432
BLEU436
BGLU440
BHOH1897
BHOH2000
BHOH2225

site_idDC6
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT A 1730
ChainResidue
ATYR371
ATYR371
AFMT1735
BPRO51
BTYR345

site_idDC7
Number of Residues5
DetailsBINDING SITE FOR RESIDUE FMT B 1731
ChainResidue
BLEU336
BPHE337
BASP341
BARG344
BFMT1736

site_idDC8
Number of Residues4
DetailsBINDING SITE FOR RESIDUE FMT A 1732
ChainResidue
ALEU336
APHE337
AARG344
AFMT1733

site_idDC9
Number of Residues9
DetailsBINDING SITE FOR RESIDUE FMT A 1733
ChainResidue
AALA318
AARG344
AFMT1732
AHOH2787
BTHR36
BLEU39
BGLU40
BHOH1800
BHOH2160

site_idEC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE FMT A 1734
ChainResidue
AALA57
ALYS58
AGLY59
AARG101
ATYR306
AGLU311
AFMT1710
AHOH2845

site_idEC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE FMT A 1735
ChainResidue
AARG344
AFMT1730
AAZI2600
AHOH2727
AHOH2867
BARG47
BTYR345

site_idEC3
Number of Residues9
DetailsBINDING SITE FOR RESIDUE FMT B 1736
ChainResidue
ATHR36
ALEU39
AGLU40
BALA318
BARG344
BFMT1731
BHOH1917
BHOH2011
BHOH2179

Functional Information from PROSITE/UniProt
site_idPS00437
Number of Residues9
DetailsCATALASE_1 Catalase proximal heme-ligand signature. RLFSYgDTH
ChainResidueDetails
AARG335-HIS343

site_idPS00438
Number of Residues17
DetailsCATALASE_2 Catalase proximal active site signature. FdReripERvvHakGSG
ChainResidueDetails
APHE45-GLY61

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: ACT_SITE => ECO:0000255|PROSITE-ProRule:PRU10013
ChainResidueDetails
AHIS56
AASN129
BHIS56
BASN129

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: axial binding residue => ECO:0000250
ChainResidueDetails
ATYR339
BTYR339

Catalytic Information from CSA
site_idCSA1
Number of Residues3
DetailsAnnotated By Reference To The Literature 1iph
ChainResidueDetails
AHIS56
ASER95
AASN129

site_idCSA2
Number of Residues3
DetailsAnnotated By Reference To The Literature 1iph
ChainResidueDetails
BHIS56
BSER95
BASN129

223790

PDB entries from 2024-08-14

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