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1Q7E

Crystal Structure of YfdW protein from E. coli

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0008410molecular_functionCoA-transferase activity
A0016740molecular_functiontransferase activity
A0033608molecular_functionformyl-CoA transferase activity
A0033611biological_processoxalate catabolic process
A0071468biological_processcellular response to acidic pH
Functional Information from PDB Data
site_idAC1
Number of Residues11
DetailsBINDING SITE FOR RESIDUE MET A 500
ChainResidue
AASN98
AHOH1625
AHOH1662
APHE99
AHIS100
APRO101
AILE126
ALYS127
AGLY128
ALYS139
AALA140

site_idAC2
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MET A 600
ChainResidue
ATRP255
APHE308
AALA312
AGLU315
AHOH1395
AHOH1527

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE MPD A 700
ChainResidue
AGLY160
AARG243
ATRP262
AGLU263
AASP265
APRO266
ATYR269
AHOH1460

site_idAC4
Number of Residues8
DetailsBINDING SITE FOR RESIDUE MPD A 800
ChainResidue
AGLU73
ALEU74
AASN75
ATHR395
AMSE412
AHIS416
AHOH1530
AHOH1536

site_idAC5
Number of Residues6
DetailsBINDING SITE FOR RESIDUE MPD A 900
ChainResidue
ATRP158
APRO230
AGLN231
AGLY235
AHOH1387
AHOH1425

site_idAC6
Number of Residues2
DetailsBINDING SITE FOR RESIDUE MPD A 1000
ChainResidue
AALA285
AHOH1634

site_idAC7
Number of Residues4
DetailsBINDING SITE FOR RESIDUE MPD A 1100
ChainResidue
APRO134
AALA328
ATHR331
AHOH1493

site_idAC8
Number of Residues5
DetailsBINDING SITE FOR RESIDUE MPD A 1200
ChainResidue
ATHR5
ATRP30
AGLY32
APRO383
AASP384

site_idAC9
Number of Residues7
DetailsBINDING SITE FOR RESIDUE MPD A 1300
ChainResidue
ALYS11
ALEU13
ALEU88
AGLU91
AGLU401
AHOH1430
AHOH1558

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"description":"Nucleophile","evidences":[{"source":"PubMed","id":"12844490","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues11
DetailsBinding site: {}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00742","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"14993676","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues1
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00742","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues2
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

Catalytic Information from CSA
site_idCSA1
Number of Residues1
DetailsAnnotated By Reference To The Literature 1xvt
ChainResidueDetails
AASP171

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PDB entries from 2025-10-15

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