1Q0D
Crystal structure of Ni-containing superoxide dismutase with Ni-ligation corresponding to the oxidized state
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004784 | molecular_function | superoxide dismutase activity |
| A | 0016151 | molecular_function | nickel cation binding |
| A | 0016209 | molecular_function | antioxidant activity |
| B | 0004784 | molecular_function | superoxide dismutase activity |
| B | 0016151 | molecular_function | nickel cation binding |
| B | 0016209 | molecular_function | antioxidant activity |
| C | 0004784 | molecular_function | superoxide dismutase activity |
| C | 0016151 | molecular_function | nickel cation binding |
| C | 0016209 | molecular_function | antioxidant activity |
| D | 0004784 | molecular_function | superoxide dismutase activity |
| D | 0016151 | molecular_function | nickel cation binding |
| D | 0016209 | molecular_function | antioxidant activity |
| E | 0004784 | molecular_function | superoxide dismutase activity |
| E | 0016151 | molecular_function | nickel cation binding |
| E | 0016209 | molecular_function | antioxidant activity |
| F | 0004784 | molecular_function | superoxide dismutase activity |
| F | 0016151 | molecular_function | nickel cation binding |
| F | 0016209 | molecular_function | antioxidant activity |
| G | 0004784 | molecular_function | superoxide dismutase activity |
| G | 0016151 | molecular_function | nickel cation binding |
| G | 0016209 | molecular_function | antioxidant activity |
| H | 0004784 | molecular_function | superoxide dismutase activity |
| H | 0016151 | molecular_function | nickel cation binding |
| H | 0016209 | molecular_function | antioxidant activity |
| I | 0004784 | molecular_function | superoxide dismutase activity |
| I | 0016151 | molecular_function | nickel cation binding |
| I | 0016209 | molecular_function | antioxidant activity |
| J | 0004784 | molecular_function | superoxide dismutase activity |
| J | 0016151 | molecular_function | nickel cation binding |
| J | 0016209 | molecular_function | antioxidant activity |
| K | 0004784 | molecular_function | superoxide dismutase activity |
| K | 0016151 | molecular_function | nickel cation binding |
| K | 0016209 | molecular_function | antioxidant activity |
| L | 0004784 | molecular_function | superoxide dismutase activity |
| L | 0016151 | molecular_function | nickel cation binding |
| L | 0016209 | molecular_function | antioxidant activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE SO4 A 9001 |
| Chain | Residue |
| A | PRO5 |
| A | GLY7 |
| A | TYR9 |
| A | ASP61 |
| A | LYS64 |
| A | HOH9100 |
| A | HOH9119 |
| A | HOH9125 |
| site_id | AC2 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE SO4 B 9002 |
| Chain | Residue |
| B | GLY7 |
| B | TYR9 |
| B | LYS64 |
| B | HOH9028 |
| B | HOH9085 |
| B | HOH9099 |
| B | PRO5 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 C 9003 |
| Chain | Residue |
| C | PRO5 |
| C | GLY7 |
| C | TYR9 |
| C | LYS64 |
| C | HOH9041 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 D 9004 |
| Chain | Residue |
| D | PRO5 |
| D | GLY7 |
| D | TYR9 |
| D | LYS64 |
| D | HOH9027 |
| D | HOH9130 |
| site_id | AC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 E 9005 |
| Chain | Residue |
| E | PRO5 |
| E | GLY7 |
| E | TYR9 |
| E | LYS64 |
| site_id | AC6 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE SO4 F 9006 |
| Chain | Residue |
| F | PRO5 |
| F | GLY7 |
| F | TYR9 |
| F | LYS64 |
| F | HOH9092 |
| F | HOH9095 |
| F | HOH9113 |
| site_id | AC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 G 9007 |
| Chain | Residue |
| G | PRO5 |
| G | GLY7 |
| G | TYR9 |
| G | HOH9120 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 H 9008 |
| Chain | Residue |
| H | PRO5 |
| H | GLY7 |
| H | TYR9 |
| H | ASP61 |
| H | LYS64 |
| H | HOH9144 |
| site_id | AC9 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE SO4 I 9009 |
| Chain | Residue |
| I | PRO5 |
| I | GLY7 |
| I | TYR9 |
| I | ASP61 |
| I | LYS64 |
| I | HOH9095 |
| I | HOH9098 |
| site_id | BC1 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 J 9010 |
| Chain | Residue |
| J | PRO5 |
| J | GLY7 |
| J | TYR9 |
| J | LYS64 |
| J | HOH9142 |
| site_id | BC2 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 K 9011 |
| Chain | Residue |
| K | PRO5 |
| K | GLY7 |
| K | TYR9 |
| K | ASP61 |
| K | LYS64 |
| K | HOH9062 |
| site_id | BC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 L 9012 |
| Chain | Residue |
| L | PRO5 |
| L | GLY7 |
| L | TYR9 |
| L | LYS64 |
| L | HOH9054 |
| L | HOH9064 |
| site_id | BC4 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE SO4 A 9013 |
| Chain | Residue |
| A | GLN46 |
| A | HOH9061 |
| A | HOH9072 |
| B | GLN46 |
| D | GLN46 |
| site_id | BC5 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE SO4 C 9014 |
| Chain | Residue |
| C | GLN46 |
| C | HOH9057 |
| C | HOH9059 |
| C | HOH9062 |
| E | GLN46 |
| F | GLN46 |
| site_id | BC6 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 H 9015 |
| Chain | Residue |
| G | GLN46 |
| H | GLN46 |
| H | HOH9067 |
| J | GLN46 |
| site_id | BC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE SO4 I 9016 |
| Chain | Residue |
| I | GLN46 |
| I | HOH9077 |
| K | GLN46 |
| L | GLN46 |
| site_id | BC8 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE 3NI A 118 |
| Chain | Residue |
| A | HIS1 |
| A | CYS2 |
| A | ASP3 |
| A | CYS6 |
| site_id | BC9 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE 3NI B 118 |
| Chain | Residue |
| B | HIS1 |
| B | CYS2 |
| B | ASP3 |
| B | CYS6 |
| site_id | CC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE 3NI C 118 |
| Chain | Residue |
| C | CYS2 |
| C | ASP3 |
| C | CYS6 |
| C | HIS1 |
| site_id | CC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE 3NI D 118 |
| Chain | Residue |
| D | HIS1 |
| D | CYS2 |
| D | ASP3 |
| D | CYS6 |
| site_id | CC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE 3NI E 118 |
| Chain | Residue |
| E | HIS1 |
| E | CYS2 |
| E | ASP3 |
| E | CYS6 |
| site_id | CC4 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE 3NI F 118 |
| Chain | Residue |
| F | HIS1 |
| F | CYS2 |
| F | CYS6 |
| site_id | CC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE 3NI G 118 |
| Chain | Residue |
| G | HIS1 |
| G | CYS2 |
| G | ASP3 |
| G | CYS6 |
| site_id | CC6 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE 3NI H 118 |
| Chain | Residue |
| H | HIS1 |
| H | CYS2 |
| H | ASP3 |
| H | CYS6 |
| site_id | CC7 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE 3NI I 118 |
| Chain | Residue |
| I | HIS1 |
| I | CYS2 |
| I | ASP3 |
| I | CYS6 |
| site_id | CC8 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE 3NI J 118 |
| Chain | Residue |
| J | HIS1 |
| J | CYS2 |
| J | ASP3 |
| J | CYS6 |
| site_id | CC9 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE 3NI K 118 |
| Chain | Residue |
| K | HIS1 |
| K | CYS2 |
| K | ASP3 |
| K | CYS6 |
| site_id | DC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE 3NI L 118 |
| Chain | Residue |
| L | HIS1 |
| L | CYS2 |
| L | ASP3 |
| L | CYS6 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 36 |
| Details | BINDING: |
| Chain | Residue | Details |
| A | HIS1 | |
| D | HIS1 | |
| D | CYS2 | |
| D | CYS6 | |
| E | HIS1 | |
| E | CYS2 | |
| E | CYS6 | |
| F | HIS1 | |
| F | CYS2 | |
| F | CYS6 | |
| G | HIS1 | |
| A | CYS2 | |
| G | CYS2 | |
| G | CYS6 | |
| H | HIS1 | |
| H | CYS2 | |
| H | CYS6 | |
| I | HIS1 | |
| I | CYS2 | |
| I | CYS6 | |
| J | HIS1 | |
| J | CYS2 | |
| A | CYS6 | |
| J | CYS6 | |
| K | HIS1 | |
| K | CYS2 | |
| K | CYS6 | |
| L | HIS1 | |
| L | CYS2 | |
| L | CYS6 | |
| B | HIS1 | |
| B | CYS2 | |
| B | CYS6 | |
| C | HIS1 | |
| C | CYS2 | |
| C | CYS6 |
