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1PYL

Crystal structure of Ribonuclease Sa2

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
A0004521molecular_functionRNA endonuclease activity
A0004540molecular_functionRNA nuclease activity
B0003723molecular_functionRNA binding
B0004521molecular_functionRNA endonuclease activity
B0004540molecular_functionRNA nuclease activity
Functional Information from PDB Data
site_idAC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 B 198
ChainResidue
ATYR77
BPRO14
BSER15
BGLN16
BPRO62
BARG70
BHOH244
BHOH262

site_idAC2
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 199
ChainResidue
AGLU56
AARG67
AARG71
AHIS86
ATYR87
BARG42
AARG34

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE SO4 B 200
ChainResidue
AARG42
BARG34
BGLU56
BARG67
BARG71
BHIS86
BTYR87
BHOH277

site_idAC4
Number of Residues7
DetailsBINDING SITE FOR RESIDUE SO4 A 201
ChainResidue
APRO14
ASER15
AGLN16
AARG70
AGLN91
AHOH223
AHOH259

Catalytic Information from CSA
site_idCSA1
Number of Residues3
Detailsa catalytic site defined by CSA, PubMed 15213380, 14500895, 4364371, 8396032
ChainResidueDetails
AGLU56
AHIS86
AARG67

site_idCSA2
Number of Residues3
Detailsa catalytic site defined by CSA, PubMed 15213380, 14500895, 4364371, 8396032
ChainResidueDetails
BGLU56
BHIS86
BARG67

site_idMCSA1
Number of Residues4
DetailsM-CSA 459
ChainResidueDetails
AGLU56proton shuttle (general acid/base)
AARG67activator, transition state stabiliser
AARG71activator, transition state stabiliser
AHIS86proton shuttle (general acid/base)

site_idMCSA2
Number of Residues4
DetailsM-CSA 459
ChainResidueDetails
BGLU56proton shuttle (general acid/base)
BARG67activator, transition state stabiliser
BARG71activator, transition state stabiliser
BHIS86proton shuttle (general acid/base)

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PDB entries from 2025-07-23

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