1PVS
3-methyladenine Glcosylase II(AlkA) Hypoxanthine complex
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003824 | molecular_function | catalytic activity |
A | 0003905 | molecular_function | alkylbase DNA N-glycosylase activity |
A | 0005515 | molecular_function | protein binding |
A | 0005737 | cellular_component | cytoplasm |
A | 0006281 | biological_process | DNA repair |
A | 0006284 | biological_process | base-excision repair |
A | 0006285 | biological_process | base-excision repair, AP site formation |
A | 0006307 | biological_process | DNA alkylation repair |
A | 0006950 | biological_process | response to stress |
A | 0006974 | biological_process | DNA damage response |
A | 0008725 | molecular_function | DNA-3-methyladenine glycosylase activity |
A | 0016787 | molecular_function | hydrolase activity |
A | 0032131 | molecular_function | alkylated DNA binding |
A | 0032993 | cellular_component | protein-DNA complex |
A | 0043916 | molecular_function | DNA-7-methylguanine glycosylase activity |
A | 0052821 | molecular_function | DNA-7-methyladenine glycosylase activity |
A | 0052822 | molecular_function | DNA-3-methylguanine glycosylase activity |
B | 0003824 | molecular_function | catalytic activity |
B | 0003905 | molecular_function | alkylbase DNA N-glycosylase activity |
B | 0005515 | molecular_function | protein binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0006281 | biological_process | DNA repair |
B | 0006284 | biological_process | base-excision repair |
B | 0006285 | biological_process | base-excision repair, AP site formation |
B | 0006307 | biological_process | DNA alkylation repair |
B | 0006950 | biological_process | response to stress |
B | 0006974 | biological_process | DNA damage response |
B | 0008725 | molecular_function | DNA-3-methyladenine glycosylase activity |
B | 0016787 | molecular_function | hydrolase activity |
B | 0032131 | molecular_function | alkylated DNA binding |
B | 0032993 | cellular_component | protein-DNA complex |
B | 0043916 | molecular_function | DNA-7-methylguanine glycosylase activity |
B | 0052821 | molecular_function | DNA-7-methyladenine glycosylase activity |
B | 0052822 | molecular_function | DNA-3-methylguanine glycosylase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE 7HP B 700 |
Chain | Residue |
B | GLY123 |
B | GLN124 |
B | LEU125 |
B | VAL126 |
B | TRP218 |
B | ASP237 |
B | ASP238 |
B | TYR239 |
site_id | AC2 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE 7HP A 800 |
Chain | Residue |
A | GLN124 |
A | LEU125 |
A | VAL126 |
A | TRP218 |
A | ASP237 |
A | ASP238 |
A | TYR239 |
A | HOH811 |
A | HOH876 |
A | GLY123 |
Functional Information from PROSITE/UniProt
site_id | PS00516 |
Number of Residues | 25 |
Details | ALKYLBASE_DNA_GLYCOS Alkylbase DNA glycosidases alkA family signature. GIGrWTAnYFaLrgwqakdvFlpDD |
Chain | Residue | Details |
A | GLY214-ASP238 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | ACT_SITE: Proton acceptor |
Chain | Residue | Details |
A | ASP238 | |
B | ASP238 |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | SITE: Determinant for substrate specificity and/or activity |
Chain | Residue | Details |
A | TRP218 | |
B | TRP218 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1diz |
Chain | Residue | Details |
A | TRP272 | |
A | ASP238 | |
A | TYR222 |
site_id | CSA2 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1diz |
Chain | Residue | Details |
B | TRP272 | |
B | ASP238 | |
B | TYR222 |
site_id | MCSA1 |
Number of Residues | 3 |
Details | M-CSA 313 |
Chain | Residue | Details |
A | TRP218 | electrostatic stabiliser, van der waals interaction |
A | TYR222 | electrostatic stabiliser, van der waals interaction |
A | ASP238 | attractive charge-charge interaction, electrostatic stabiliser, promote heterolysis |
site_id | MCSA2 |
Number of Residues | 3 |
Details | M-CSA 313 |
Chain | Residue | Details |
B | TRP218 | electrostatic stabiliser, van der waals interaction |
B | TYR222 | electrostatic stabiliser, van der waals interaction |
B | ASP238 | attractive charge-charge interaction, electrostatic stabiliser, promote heterolysis |