1P7L
S-Adenosylmethionine synthetase complexed with AMPPNP and Met.
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000287 | molecular_function | magnesium ion binding |
A | 0004478 | molecular_function | methionine adenosyltransferase activity |
A | 0005515 | molecular_function | protein binding |
A | 0005524 | molecular_function | ATP binding |
A | 0005737 | cellular_component | cytoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0006556 | biological_process | S-adenosylmethionine biosynthetic process |
A | 0006730 | biological_process | one-carbon metabolic process |
A | 0016740 | molecular_function | transferase activity |
A | 0030955 | molecular_function | potassium ion binding |
A | 0033353 | biological_process | S-adenosylmethionine cycle |
A | 0042802 | molecular_function | identical protein binding |
A | 0046872 | molecular_function | metal ion binding |
B | 0000287 | molecular_function | magnesium ion binding |
B | 0004478 | molecular_function | methionine adenosyltransferase activity |
B | 0005515 | molecular_function | protein binding |
B | 0005524 | molecular_function | ATP binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0005829 | cellular_component | cytosol |
B | 0006556 | biological_process | S-adenosylmethionine biosynthetic process |
B | 0006730 | biological_process | one-carbon metabolic process |
B | 0016740 | molecular_function | transferase activity |
B | 0030955 | molecular_function | potassium ion binding |
B | 0033353 | biological_process | S-adenosylmethionine cycle |
B | 0042802 | molecular_function | identical protein binding |
B | 0046872 | molecular_function | metal ion binding |
C | 0000287 | molecular_function | magnesium ion binding |
C | 0004478 | molecular_function | methionine adenosyltransferase activity |
C | 0005515 | molecular_function | protein binding |
C | 0005524 | molecular_function | ATP binding |
C | 0005737 | cellular_component | cytoplasm |
C | 0005829 | cellular_component | cytosol |
C | 0006556 | biological_process | S-adenosylmethionine biosynthetic process |
C | 0006730 | biological_process | one-carbon metabolic process |
C | 0016740 | molecular_function | transferase activity |
C | 0030955 | molecular_function | potassium ion binding |
C | 0033353 | biological_process | S-adenosylmethionine cycle |
C | 0042802 | molecular_function | identical protein binding |
C | 0046872 | molecular_function | metal ion binding |
D | 0000287 | molecular_function | magnesium ion binding |
D | 0004478 | molecular_function | methionine adenosyltransferase activity |
D | 0005515 | molecular_function | protein binding |
D | 0005524 | molecular_function | ATP binding |
D | 0005737 | cellular_component | cytoplasm |
D | 0005829 | cellular_component | cytosol |
D | 0006556 | biological_process | S-adenosylmethionine biosynthetic process |
D | 0006730 | biological_process | one-carbon metabolic process |
D | 0016740 | molecular_function | transferase activity |
D | 0030955 | molecular_function | potassium ion binding |
D | 0033353 | biological_process | S-adenosylmethionine cycle |
D | 0042802 | molecular_function | identical protein binding |
D | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE K A 386 |
Chain | Residue |
A | ASP238 |
A | CYS239 |
A | ANP384 |
B | GLU42 |
site_id | AC2 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE MG A 387 |
Chain | Residue |
A | LYS245 |
A | ANP384 |
site_id | AC3 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE MG A 388 |
Chain | Residue |
A | ASP16 |
A | ANP384 |
site_id | AC4 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE K B 486 |
Chain | Residue |
B | ASP238 |
B | CYS239 |
B | ANP484 |
A | GLU42 |
site_id | AC5 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE MG B 487 |
Chain | Residue |
B | LYS245 |
B | ANP484 |
site_id | AC6 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE MG B 488 |
Chain | Residue |
B | ASP16 |
B | ANP484 |
site_id | AC7 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE K C 686 |
Chain | Residue |
C | ASP238 |
C | CYS239 |
C | PPK684 |
D | GLU42 |
site_id | AC8 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE MG D 687 |
Chain | Residue |
C | PPK684 |
D | ASP118 |
D | ASP271 |
site_id | AC9 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE MG C 688 |
Chain | Residue |
C | ASP16 |
C | PPK684 |
site_id | BC1 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE K D 886 |
Chain | Residue |
C | GLU42 |
D | ASP238 |
D | CYS239 |
D | PPK884 |
site_id | BC2 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE MG C 887 |
Chain | Residue |
C | ASP271 |
D | PPK884 |
site_id | BC3 |
Number of Residues | 2 |
Details | BINDING SITE FOR RESIDUE MG D 888 |
Chain | Residue |
D | ASP16 |
D | PPK884 |
site_id | BC4 |
Number of Residues | 22 |
Details | BINDING SITE FOR RESIDUE SAM C 685 |
Chain | Residue |
C | HIS14 |
C | PRO15 |
C | ASP163 |
C | LYS165 |
C | THR227 |
C | ARG229 |
C | PHE230 |
C | ASP238 |
C | PPK684 |
C | HOH700 |
C | HOH702 |
C | HOH711 |
C | HOH716 |
D | ALA40 |
D | GLU55 |
D | GLN98 |
D | ASP101 |
D | ILE102 |
D | GLY117 |
D | ASP118 |
D | LYS269 |
D | ILE302 |
site_id | BC5 |
Number of Residues | 21 |
Details | BINDING SITE FOR RESIDUE SAM C 885 |
Chain | Residue |
C | ALA40 |
C | GLU55 |
C | GLN98 |
C | ASP101 |
C | ILE102 |
C | GLY117 |
C | ASP118 |
C | LYS269 |
C | ILE302 |
C | HOH900 |
C | HOH902 |
D | HIS14 |
D | PRO15 |
D | ASP163 |
D | LYS165 |
D | THR227 |
D | ARG229 |
D | PHE230 |
D | ASP238 |
D | PPK884 |
D | HOH916 |
site_id | BC6 |
Number of Residues | 24 |
Details | BINDING SITE FOR RESIDUE ANP A 384 |
Chain | Residue |
B | MET385 |
A | HIS14 |
A | PRO15 |
A | ASP16 |
A | ASP163 |
A | LYS165 |
A | SER186 |
A | ARG229 |
A | PHE230 |
A | ASP238 |
A | ARG244 |
A | LYS245 |
A | K386 |
A | MG387 |
A | MG388 |
A | HOH411 |
A | HOH413 |
B | ILE102 |
B | ASP118 |
B | GLY259 |
B | GLY260 |
B | ALA261 |
B | LYS265 |
B | ASP271 |
site_id | BC7 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE MET B 385 |
Chain | Residue |
A | ASP238 |
A | ANP384 |
A | HOH401 |
B | ALA40 |
B | GLU55 |
B | GLN98 |
B | ILE102 |
B | GLY117 |
B | ASP118 |
B | LYS269 |
B | ILE302 |
B | HOH400 |
site_id | BC8 |
Number of Residues | 25 |
Details | BINDING SITE FOR RESIDUE ANP B 484 |
Chain | Residue |
A | ASP101 |
A | ILE102 |
A | ASP118 |
A | GLY259 |
A | GLY260 |
A | ALA261 |
A | LYS265 |
A | ASP271 |
A | MET485 |
A | HOH530 |
B | HIS14 |
B | PRO15 |
B | ASP16 |
B | ASP163 |
B | LYS165 |
B | SER186 |
B | ARG229 |
B | PHE230 |
B | ASP238 |
B | ARG244 |
B | LYS245 |
B | K486 |
B | MG487 |
B | MG488 |
B | HOH513 |
site_id | BC9 |
Number of Residues | 12 |
Details | BINDING SITE FOR RESIDUE MET A 485 |
Chain | Residue |
A | ALA40 |
A | GLU55 |
A | GLN98 |
A | ILE102 |
A | GLY117 |
A | ASP118 |
A | LYS269 |
A | ILE302 |
A | HOH500 |
A | HOH501 |
B | ASP238 |
B | ANP484 |
site_id | CC1 |
Number of Residues | 15 |
Details | BINDING SITE FOR RESIDUE PPK C 684 |
Chain | Residue |
C | HIS14 |
C | ASP16 |
C | LYS165 |
C | ARG244 |
C | LYS245 |
C | SAM685 |
C | K686 |
C | MG688 |
D | ASP118 |
D | GLY259 |
D | GLY260 |
D | ALA261 |
D | LYS265 |
D | ASP271 |
D | MG687 |
site_id | CC2 |
Number of Residues | 16 |
Details | BINDING SITE FOR RESIDUE PPK D 884 |
Chain | Residue |
C | ASP118 |
C | GLY259 |
C | GLY260 |
C | ALA261 |
C | LYS265 |
C | ASP271 |
C | SAM885 |
C | MG887 |
C | HOH930 |
D | HIS14 |
D | ASP16 |
D | LYS165 |
D | ARG244 |
D | LYS245 |
D | K886 |
D | MG888 |
Functional Information from PROSITE/UniProt
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 28 |
Details | BINDING: in other chain => ECO:0000255|HAMAP-Rule:MF_00086, ECO:0000269|PubMed:14967023, ECO:0007744|PDB:1P7L, ECO:0007744|PDB:1RG9 |
Chain | Residue | Details |
A | PRO15 | |
B | SER99 | |
B | ALA164 | |
B | PHE230 | |
B | LYS245 | |
B | VAL270 | |
C | PRO15 | |
C | ILE56 | |
C | SER99 | |
C | ALA164 | |
C | PHE230 | |
A | ILE56 | |
C | LYS245 | |
C | VAL270 | |
D | PRO15 | |
D | ILE56 | |
D | SER99 | |
D | ALA164 | |
D | PHE230 | |
D | LYS245 | |
D | VAL270 | |
A | SER99 | |
A | ALA164 | |
A | PHE230 | |
A | LYS245 | |
A | VAL270 | |
B | PRO15 | |
B | ILE56 |
site_id | SWS_FT_FI2 |
Number of Residues | 12 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00086, ECO:0000269|PubMed:14967023, ECO:0007744|PDB:1P7L, ECO:0007744|PDB:1RG9 |
Chain | Residue | Details |
A | LYS17 | |
D | LYS17 | |
D | PHE262 | |
D | ASP266 | |
A | PHE262 | |
A | ASP266 | |
B | LYS17 | |
B | PHE262 | |
B | ASP266 | |
C | LYS17 | |
C | PHE262 | |
C | ASP266 |
site_id | SWS_FT_FI3 |
Number of Residues | 4 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00086, ECO:0000269|PubMed:14967023, ECO:0000305|PubMed:7629147, ECO:0007744|PDB:1MXC, ECO:0007744|PDB:1P7L, ECO:0007744|PDB:1RG9 |
Chain | Residue | Details |
A | THR43 | |
B | THR43 | |
C | THR43 | |
D | THR43 |
site_id | SWS_FT_FI4 |
Number of Residues | 4 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00086, ECO:0000269|PubMed:14967023, ECO:0007744|PDB:1P7L |
Chain | Residue | Details |
A | CYS239 | |
B | CYS239 | |
C | CYS239 | |
D | CYS239 |
site_id | SWS_FT_FI5 |
Number of Residues | 4 |
Details | MOD_RES: N6-acetyllysine => ECO:0000269|PubMed:18723842 |
Chain | Residue | Details |
A | HIS3 | |
B | HIS3 | |
C | HIS3 | |
D | HIS3 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 7 |
Details | Annotated By Reference To The Literature 1fug |
Chain | Residue | Details |
A | LYS245 | |
A | HIS14 | |
A | LYS165 | |
A | ARG244 | |
B | LYS269 | |
B | LYS265 | |
B | ASP271 |
site_id | CSA2 |
Number of Residues | 7 |
Details | Annotated By Reference To The Literature 1fug |
Chain | Residue | Details |
A | LYS269 | |
A | LYS265 | |
A | ASP271 | |
B | LYS245 | |
B | HIS14 | |
B | LYS165 | |
B | ARG244 |
site_id | CSA3 |
Number of Residues | 7 |
Details | Annotated By Reference To The Literature 1fug |
Chain | Residue | Details |
C | LYS245 | |
C | HIS14 | |
C | LYS165 | |
C | ARG244 | |
D | LYS269 | |
D | LYS265 | |
D | ASP271 |
site_id | CSA4 |
Number of Residues | 7 |
Details | Annotated By Reference To The Literature 1fug |
Chain | Residue | Details |
C | LYS269 | |
C | LYS265 | |
C | ASP271 | |
D | LYS245 | |
D | HIS14 | |
D | LYS165 | |
D | ARG244 |