1P7G
Crystal structure of superoxide dismutase from Pyrobaculum aerophilum
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004784 | molecular_function | superoxide dismutase activity |
| A | 0006801 | biological_process | superoxide metabolic process |
| A | 0019430 | biological_process | removal of superoxide radicals |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0004784 | molecular_function | superoxide dismutase activity |
| B | 0006801 | biological_process | superoxide metabolic process |
| B | 0019430 | biological_process | removal of superoxide radicals |
| B | 0046872 | molecular_function | metal ion binding |
| C | 0004784 | molecular_function | superoxide dismutase activity |
| C | 0006801 | biological_process | superoxide metabolic process |
| C | 0019430 | biological_process | removal of superoxide radicals |
| C | 0046872 | molecular_function | metal ion binding |
| D | 0004784 | molecular_function | superoxide dismutase activity |
| D | 0006801 | biological_process | superoxide metabolic process |
| D | 0019430 | biological_process | removal of superoxide radicals |
| D | 0046872 | molecular_function | metal ion binding |
| E | 0004784 | molecular_function | superoxide dismutase activity |
| E | 0006801 | biological_process | superoxide metabolic process |
| E | 0019430 | biological_process | removal of superoxide radicals |
| E | 0046872 | molecular_function | metal ion binding |
| F | 0004784 | molecular_function | superoxide dismutase activity |
| F | 0006801 | biological_process | superoxide metabolic process |
| F | 0019430 | biological_process | removal of superoxide radicals |
| F | 0046872 | molecular_function | metal ion binding |
| G | 0004784 | molecular_function | superoxide dismutase activity |
| G | 0006801 | biological_process | superoxide metabolic process |
| G | 0019430 | biological_process | removal of superoxide radicals |
| G | 0046872 | molecular_function | metal ion binding |
| H | 0004784 | molecular_function | superoxide dismutase activity |
| H | 0006801 | biological_process | superoxide metabolic process |
| H | 0019430 | biological_process | removal of superoxide radicals |
| H | 0046872 | molecular_function | metal ion binding |
| I | 0004784 | molecular_function | superoxide dismutase activity |
| I | 0006801 | biological_process | superoxide metabolic process |
| I | 0019430 | biological_process | removal of superoxide radicals |
| I | 0046872 | molecular_function | metal ion binding |
| J | 0004784 | molecular_function | superoxide dismutase activity |
| J | 0006801 | biological_process | superoxide metabolic process |
| J | 0019430 | biological_process | removal of superoxide radicals |
| J | 0046872 | molecular_function | metal ion binding |
| K | 0004784 | molecular_function | superoxide dismutase activity |
| K | 0006801 | biological_process | superoxide metabolic process |
| K | 0019430 | biological_process | removal of superoxide radicals |
| K | 0046872 | molecular_function | metal ion binding |
| L | 0004784 | molecular_function | superoxide dismutase activity |
| L | 0006801 | biological_process | superoxide metabolic process |
| L | 0019430 | biological_process | removal of superoxide radicals |
| L | 0046872 | molecular_function | metal ion binding |
| M | 0004784 | molecular_function | superoxide dismutase activity |
| M | 0006801 | biological_process | superoxide metabolic process |
| M | 0019430 | biological_process | removal of superoxide radicals |
| M | 0046872 | molecular_function | metal ion binding |
| N | 0004784 | molecular_function | superoxide dismutase activity |
| N | 0006801 | biological_process | superoxide metabolic process |
| N | 0019430 | biological_process | removal of superoxide radicals |
| N | 0046872 | molecular_function | metal ion binding |
| O | 0004784 | molecular_function | superoxide dismutase activity |
| O | 0006801 | biological_process | superoxide metabolic process |
| O | 0019430 | biological_process | removal of superoxide radicals |
| O | 0046872 | molecular_function | metal ion binding |
| P | 0004784 | molecular_function | superoxide dismutase activity |
| P | 0006801 | biological_process | superoxide metabolic process |
| P | 0019430 | biological_process | removal of superoxide radicals |
| P | 0046872 | molecular_function | metal ion binding |
| Q | 0004784 | molecular_function | superoxide dismutase activity |
| Q | 0006801 | biological_process | superoxide metabolic process |
| Q | 0019430 | biological_process | removal of superoxide radicals |
| Q | 0046872 | molecular_function | metal ion binding |
| R | 0004784 | molecular_function | superoxide dismutase activity |
| R | 0006801 | biological_process | superoxide metabolic process |
| R | 0019430 | biological_process | removal of superoxide radicals |
| R | 0046872 | molecular_function | metal ion binding |
| S | 0004784 | molecular_function | superoxide dismutase activity |
| S | 0006801 | biological_process | superoxide metabolic process |
| S | 0019430 | biological_process | removal of superoxide radicals |
| S | 0046872 | molecular_function | metal ion binding |
| T | 0004784 | molecular_function | superoxide dismutase activity |
| T | 0006801 | biological_process | superoxide metabolic process |
| T | 0019430 | biological_process | removal of superoxide radicals |
| T | 0046872 | molecular_function | metal ion binding |
| U | 0004784 | molecular_function | superoxide dismutase activity |
| U | 0006801 | biological_process | superoxide metabolic process |
| U | 0019430 | biological_process | removal of superoxide radicals |
| U | 0046872 | molecular_function | metal ion binding |
| V | 0004784 | molecular_function | superoxide dismutase activity |
| V | 0006801 | biological_process | superoxide metabolic process |
| V | 0019430 | biological_process | removal of superoxide radicals |
| V | 0046872 | molecular_function | metal ion binding |
| W | 0004784 | molecular_function | superoxide dismutase activity |
| W | 0006801 | biological_process | superoxide metabolic process |
| W | 0019430 | biological_process | removal of superoxide radicals |
| W | 0046872 | molecular_function | metal ion binding |
| X | 0004784 | molecular_function | superoxide dismutase activity |
| X | 0006801 | biological_process | superoxide metabolic process |
| X | 0019430 | biological_process | removal of superoxide radicals |
| X | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ACT B 302 |
| Chain | Residue |
| B | SER91 |
| B | ARG209 |
| B | LEU220 |
| B | LYS221 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ACT D 304 |
| Chain | Residue |
| D | SER91 |
| D | ARG209 |
| D | LEU220 |
| D | LYS221 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE ACT E 305 |
| Chain | Residue |
| E | LEU220 |
| E | LYS221 |
| E | HOH1169 |
| E | HOH2727 |
| E | ARG209 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE ACT F 306 |
| Chain | Residue |
| F | SER91 |
| F | ARG209 |
| F | LEU220 |
| F | LYS221 |
| F | LEU222 |
| site_id | AC5 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ACT H 308 |
| Chain | Residue |
| H | SER91 |
| H | ARG209 |
| H | LEU220 |
| H | LYS221 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE ACT J 310 |
| Chain | Residue |
| J | ARG209 |
| J | LEU220 |
| J | LYS221 |
| site_id | AC7 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE ACT L 312 |
| Chain | Residue |
| L | SER91 |
| L | ARG209 |
| L | LEU220 |
| L | LYS221 |
| L | HOH2798 |
| L | HOH2894 |
| site_id | AC8 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE ACT M 313 |
| Chain | Residue |
| M | SER91 |
| M | ARG209 |
| M | LEU220 |
| M | LYS221 |
| M | HOH2853 |
| site_id | AC9 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ACT N 314 |
| Chain | Residue |
| N | SER91 |
| N | ARG209 |
| N | LEU220 |
| N | LYS221 |
| site_id | BC1 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE ACT O 315 |
| Chain | Residue |
| O | SER91 |
| O | ILE92 |
| O | ARG209 |
| O | LEU220 |
| O | LYS221 |
| O | HOH2743 |
| site_id | BC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ACT P 316 |
| Chain | Residue |
| P | SER91 |
| P | ARG209 |
| P | LEU220 |
| P | LYS221 |
| site_id | BC3 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ACT Q 317 |
| Chain | Residue |
| Q | SER91 |
| Q | ARG209 |
| Q | LEU220 |
| Q | LYS221 |
| site_id | BC4 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ACT R 318 |
| Chain | Residue |
| R | SER91 |
| R | ARG209 |
| R | LEU220 |
| R | LYS221 |
| site_id | BC5 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE ACT S 319 |
| Chain | Residue |
| S | SER91 |
| S | ARG209 |
| S | LEU220 |
| S | LYS221 |
| S | HOH2761 |
| site_id | BC6 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE ACT T 320 |
| Chain | Residue |
| Q | LEU149 |
| T | SER91 |
| T | ARG209 |
| T | LEU220 |
| T | LYS221 |
| site_id | BC7 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE ACT U 321 |
| Chain | Residue |
| U | SER91 |
| U | ARG209 |
| U | LEU220 |
| site_id | BC8 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ACT V 322 |
| Chain | Residue |
| V | SER91 |
| V | ARG209 |
| V | LEU220 |
| V | LYS221 |
| site_id | BC9 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ACT W 323 |
| Chain | Residue |
| W | SER91 |
| W | ARG209 |
| W | LEU220 |
| W | LYS221 |
| site_id | CC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ACT X 324 |
| Chain | Residue |
| X | SER91 |
| X | ARG209 |
| X | LEU220 |
| X | LYS221 |
| site_id | CC2 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE BME B 402 |
| Chain | Residue |
| A | ALA75 |
| A | ARG78 |
| A | ASP79 |
| B | ASP72 |
| B | ARG74 |
| B | ALA75 |
| B | ARG78 |
| site_id | CC3 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE BME D 404 |
| Chain | Residue |
| C | ALA75 |
| C | ARG78 |
| C | ASP79 |
| D | ASP72 |
| D | ARG74 |
| D | ALA75 |
| D | ARG78 |
| D | HOH2716 |
| site_id | CC4 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE BME F 406 |
| Chain | Residue |
| E | ASP79 |
| F | ASP72 |
| F | ARG74 |
| F | ALA75 |
| F | ARG78 |
| E | ALA75 |
| site_id | CC5 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE BME H 408 |
| Chain | Residue |
| G | ALA75 |
| G | ARG78 |
| G | ASP79 |
| H | ASP72 |
| H | ARG74 |
| H | ALA75 |
| H | ARG78 |
| site_id | CC6 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE BME I 410 |
| Chain | Residue |
| I | ALA75 |
| I | ARG78 |
| I | ASP79 |
| I | HOH762 |
| J | ASP72 |
| J | ARG74 |
| J | ALA75 |
| J | ARG78 |
| J | HOH2728 |
| site_id | CC7 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE BME K 412 |
| Chain | Residue |
| K | ALA75 |
| K | ARG78 |
| K | ASP79 |
| L | ARG74 |
| L | ALA75 |
| L | ARG78 |
| L | HOH2549 |
| site_id | CC8 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE BME N 414 |
| Chain | Residue |
| M | ALA75 |
| M | ARG78 |
| M | ASP79 |
| M | HOH2911 |
| N | ASP72 |
| N | ARG74 |
| N | ALA75 |
| N | ARG78 |
| N | HOH1513 |
| site_id | CC9 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE BME P 416 |
| Chain | Residue |
| O | ALA75 |
| O | ARG78 |
| O | ASP79 |
| P | ASP72 |
| P | ARG74 |
| P | ALA75 |
| P | ARG78 |
| site_id | DC1 |
| Number of Residues | 8 |
| Details | BINDING SITE FOR RESIDUE BME Q 418 |
| Chain | Residue |
| Q | ALA75 |
| Q | ARG78 |
| Q | ASP79 |
| R | ASP72 |
| R | ARG74 |
| R | ALA75 |
| R | ARG78 |
| R | HOH2742 |
| site_id | DC2 |
| Number of Residues | 7 |
| Details | BINDING SITE FOR RESIDUE BME T 420 |
| Chain | Residue |
| S | ALA75 |
| S | ARG78 |
| S | ASP79 |
| T | ASP72 |
| T | ARG74 |
| T | ALA75 |
| T | ARG78 |
| site_id | DC3 |
| Number of Residues | 6 |
| Details | BINDING SITE FOR RESIDUE BME V 422 |
| Chain | Residue |
| U | ALA75 |
| U | ARG78 |
| U | ASP79 |
| V | ARG74 |
| V | ALA75 |
| V | ARG78 |
| site_id | DC4 |
| Number of Residues | 9 |
| Details | BINDING SITE FOR RESIDUE BME X 424 |
| Chain | Residue |
| W | ALA75 |
| W | ARG78 |
| W | ASP79 |
| W | HOH2726 |
| X | ASP72 |
| X | ARG74 |
| X | ALA75 |
| X | ARG78 |
| X | HOH1887 |
Functional Information from PROSITE/UniProt
| site_id | PS00088 |
| Number of Residues | 8 |
| Details | SOD_MN Manganese and iron superoxide dismutases signature. DvWEHAYY |
| Chain | Residue | Details |
| A | ASP176-TYR183 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 96 |
| Details | Binding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
