Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

1OJD

HUMAN MONOAMINE OXIDASE B IN COMPLEX WITH Lauryldimethylamine-N-oxide (LDAO)

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005515	molecular_function	protein binding
A	0005739	cellular_component	mitochondrion
A	0005740	cellular_component	mitochondrial envelope
A	0005741	cellular_component	mitochondrial outer membrane
A	0008131	molecular_function	primary methylamine oxidase activity
A	0009055	molecular_function	electron transfer activity
A	0016491	molecular_function	oxidoreductase activity
A	0019607	biological_process	phenylethylamine catabolic process
A	0021762	biological_process	substantia nigra development
A	0042420	biological_process	dopamine catabolic process
A	0042428	biological_process	serotonin metabolic process
A	0050665	biological_process	hydrogen peroxide biosynthetic process
A	0097621	molecular_function	monoamine oxidase activity
B	0005515	molecular_function	protein binding
B	0005739	cellular_component	mitochondrion
B	0005740	cellular_component	mitochondrial envelope
B	0005741	cellular_component	mitochondrial outer membrane
B	0008131	molecular_function	primary methylamine oxidase activity
B	0009055	molecular_function	electron transfer activity
B	0016491	molecular_function	oxidoreductase activity
B	0019607	biological_process	phenylethylamine catabolic process
B	0021762	biological_process	substantia nigra development
B	0042420	biological_process	dopamine catabolic process
B	0042428	biological_process	serotonin metabolic process
B	0050665	biological_process	hydrogen peroxide biosynthetic process
B	0097621	molecular_function	monoamine oxidase activity
C	0005515	molecular_function	protein binding
C	0005739	cellular_component	mitochondrion
C	0005740	cellular_component	mitochondrial envelope
C	0005741	cellular_component	mitochondrial outer membrane
C	0008131	molecular_function	primary methylamine oxidase activity
C	0009055	molecular_function	electron transfer activity
C	0016491	molecular_function	oxidoreductase activity
C	0019607	biological_process	phenylethylamine catabolic process
C	0021762	biological_process	substantia nigra development
C	0042420	biological_process	dopamine catabolic process
C	0042428	biological_process	serotonin metabolic process
C	0050665	biological_process	hydrogen peroxide biosynthetic process
C	0097621	molecular_function	monoamine oxidase activity
D	0005515	molecular_function	protein binding
D	0005739	cellular_component	mitochondrion
D	0005740	cellular_component	mitochondrial envelope
D	0005741	cellular_component	mitochondrial outer membrane
D	0008131	molecular_function	primary methylamine oxidase activity
D	0009055	molecular_function	electron transfer activity
D	0016491	molecular_function	oxidoreductase activity
D	0019607	biological_process	phenylethylamine catabolic process
D	0021762	biological_process	substantia nigra development
D	0042420	biological_process	dopamine catabolic process
D	0042428	biological_process	serotonin metabolic process
D	0050665	biological_process	hydrogen peroxide biosynthetic process
D	0097621	molecular_function	monoamine oxidase activity
E	0005515	molecular_function	protein binding
E	0005739	cellular_component	mitochondrion
E	0005740	cellular_component	mitochondrial envelope
E	0005741	cellular_component	mitochondrial outer membrane
E	0008131	molecular_function	primary methylamine oxidase activity
E	0009055	molecular_function	electron transfer activity
E	0016491	molecular_function	oxidoreductase activity
E	0019607	biological_process	phenylethylamine catabolic process
E	0021762	biological_process	substantia nigra development
E	0042420	biological_process	dopamine catabolic process
E	0042428	biological_process	serotonin metabolic process
E	0050665	biological_process	hydrogen peroxide biosynthetic process
E	0097621	molecular_function	monoamine oxidase activity
F	0005515	molecular_function	protein binding
F	0005739	cellular_component	mitochondrion
F	0005740	cellular_component	mitochondrial envelope
F	0005741	cellular_component	mitochondrial outer membrane
F	0008131	molecular_function	primary methylamine oxidase activity
F	0009055	molecular_function	electron transfer activity
F	0016491	molecular_function	oxidoreductase activity
F	0019607	biological_process	phenylethylamine catabolic process
F	0021762	biological_process	substantia nigra development
F	0042420	biological_process	dopamine catabolic process
F	0042428	biological_process	serotonin metabolic process
F	0050665	biological_process	hydrogen peroxide biosynthetic process
F	0097621	molecular_function	monoamine oxidase activity
G	0005515	molecular_function	protein binding
G	0005739	cellular_component	mitochondrion
G	0005740	cellular_component	mitochondrial envelope
G	0005741	cellular_component	mitochondrial outer membrane
G	0008131	molecular_function	primary methylamine oxidase activity
G	0009055	molecular_function	electron transfer activity
G	0016491	molecular_function	oxidoreductase activity
G	0019607	biological_process	phenylethylamine catabolic process
G	0021762	biological_process	substantia nigra development
G	0042420	biological_process	dopamine catabolic process
G	0042428	biological_process	serotonin metabolic process
G	0050665	biological_process	hydrogen peroxide biosynthetic process
G	0097621	molecular_function	monoamine oxidase activity
H	0005515	molecular_function	protein binding
H	0005739	cellular_component	mitochondrion
H	0005740	cellular_component	mitochondrial envelope
H	0005741	cellular_component	mitochondrial outer membrane
H	0008131	molecular_function	primary methylamine oxidase activity
H	0009055	molecular_function	electron transfer activity
H	0016491	molecular_function	oxidoreductase activity
H	0019607	biological_process	phenylethylamine catabolic process
H	0021762	biological_process	substantia nigra development
H	0042420	biological_process	dopamine catabolic process
H	0042428	biological_process	serotonin metabolic process
H	0050665	biological_process	hydrogen peroxide biosynthetic process
H	0097621	molecular_function	monoamine oxidase activity
I	0005515	molecular_function	protein binding
I	0005739	cellular_component	mitochondrion
I	0005740	cellular_component	mitochondrial envelope
I	0005741	cellular_component	mitochondrial outer membrane
I	0008131	molecular_function	primary methylamine oxidase activity
I	0009055	molecular_function	electron transfer activity
I	0016491	molecular_function	oxidoreductase activity
I	0019607	biological_process	phenylethylamine catabolic process
I	0021762	biological_process	substantia nigra development
I	0042420	biological_process	dopamine catabolic process
I	0042428	biological_process	serotonin metabolic process
I	0050665	biological_process	hydrogen peroxide biosynthetic process
I	0097621	molecular_function	monoamine oxidase activity
L	0005515	molecular_function	protein binding
L	0005739	cellular_component	mitochondrion
L	0005740	cellular_component	mitochondrial envelope
L	0005741	cellular_component	mitochondrial outer membrane
L	0008131	molecular_function	primary methylamine oxidase activity
L	0009055	molecular_function	electron transfer activity
L	0016491	molecular_function	oxidoreductase activity
L	0019607	biological_process	phenylethylamine catabolic process
L	0021762	biological_process	substantia nigra development
L	0042420	biological_process	dopamine catabolic process
L	0042428	biological_process	serotonin metabolic process
L	0050665	biological_process	hydrogen peroxide biosynthetic process
L	0097621	molecular_function	monoamine oxidase activity

Functional Information from PDB Data

site_id	AC1
Number of Residues	29
Details	BINDING SITE FOR RESIDUE FAD A 600

Chain	Residue
A	GLY11
A	GLY41
A	ARG42
A	GLY58
A	SER59
A	TYR60
A	PRO234
A	VAL235
A	ALA263
A	ILE264
A	TRP388
A	GLY12
A	TYR393
A	CYS397
A	TYR398
A	GLY425
A	THR426
A	GLY434
A	TYR435
A	MET436
A	ALA439
A	LDA601
A	GLY13
A	ILE14
A	SER15
A	GLU34
A	ALA35
A	ARG36
A	GLY40

site_id	AC2
Number of Residues	7
Details	BINDING SITE FOR RESIDUE LDA A 601

Chain	Residue
A	TRP119
A	LEU171
A	ILE199
A	GLN206
A	PHE343
A	TYR398
A	FAD600

site_id	AC3
Number of Residues	29
Details	BINDING SITE FOR RESIDUE FAD B 600

Chain	Residue
B	GLY11
B	GLY12
B	GLY13
B	ILE14
B	SER15
B	LEU33
B	GLU34
B	ALA35
B	ARG36
B	GLY40
B	GLY41
B	ARG42
B	GLY58
B	SER59
B	TYR60
B	PRO234
B	VAL235
B	ALA263
B	ILE264
B	TRP388
B	TYR393
B	CYS397
B	TYR398
B	GLY425
B	THR426
B	GLY434
B	TYR435
B	MET436
B	LDA601

site_id	AC4
Number of Residues	7
Details	BINDING SITE FOR RESIDUE LDA B 601

Chain	Residue
B	TRP119
B	LEU171
B	ILE199
B	GLN206
B	PHE343
B	TYR398
B	FAD600

site_id	AC5
Number of Residues	29
Details	BINDING SITE FOR RESIDUE FAD C 600

Chain	Residue
C	ALA439
C	LDA601
C	GLY11
C	GLY12
C	GLY13
C	ILE14
C	SER15
C	GLU34
C	ALA35
C	ARG36
C	GLY40
C	GLY41
C	ARG42
C	GLY58
C	SER59
C	TYR60
C	PRO234
C	VAL235
C	ALA263
C	ILE264
C	TRP388
C	TYR393
C	CYS397
C	TYR398
C	GLY425
C	THR426
C	GLY434
C	TYR435
C	MET436

site_id	AC6
Number of Residues	7
Details	BINDING SITE FOR RESIDUE LDA C 601

Chain	Residue
C	TRP119
C	LEU171
C	ILE199
C	GLN206
C	PHE343
C	TYR398
C	FAD600

site_id	AC7
Number of Residues	30
Details	BINDING SITE FOR RESIDUE FAD D 600

Chain	Residue
D	GLY11
D	GLY12
D	GLY13
D	ILE14
D	SER15
D	LEU33
D	GLU34
D	ALA35
D	ARG36
D	GLY40
D	GLY41
D	ARG42
D	GLY58
D	SER59
D	TYR60
D	PRO234
D	VAL235
D	ALA263
D	ILE264
D	TRP388
D	TYR393
D	CYS397
D	TYR398
D	GLY425
D	THR426
D	GLY434
D	TYR435
D	MET436
D	ALA439
D	LDA601

site_id	AC8
Number of Residues	7
Details	BINDING SITE FOR RESIDUE LDA D 601

Chain	Residue
D	TRP119
D	LEU171
D	ILE199
D	GLN206
D	PHE343
D	TYR398
D	FAD600

site_id	AC9
Number of Residues	28
Details	BINDING SITE FOR RESIDUE FAD E 600

Chain	Residue
E	GLY11
E	GLY12
E	GLY13
E	ILE14
E	SER15
E	GLU34
E	ALA35
E	ARG36
E	GLY40
E	GLY41
E	ARG42
E	GLY58
E	SER59
E	TYR60
E	PRO234
E	VAL235
E	ALA263
E	ILE264
E	TRP388
E	TYR393
E	CYS397
E	TYR398
E	GLY425
E	THR426
E	GLY434
E	TYR435
E	MET436
E	LDA601

site_id	BC1
Number of Residues	7
Details	BINDING SITE FOR RESIDUE LDA E 601

Chain	Residue
E	TRP119
E	LEU171
E	ILE199
E	GLN206
E	PHE343
E	TYR398
E	FAD600

site_id	BC2
Number of Residues	30
Details	BINDING SITE FOR RESIDUE FAD F 600

Chain	Residue
F	GLY11
F	GLY12
F	GLY13
F	ILE14
F	SER15
F	GLU34
F	ALA35
F	ARG36
F	GLY40
F	GLY41
F	ARG42
F	GLY58
F	SER59
F	TYR60
F	ARG233
F	PRO234
F	VAL235
F	ALA263
F	ILE264
F	TRP388
F	TYR393
F	CYS397
F	TYR398
F	GLY425
F	THR426
F	GLY434
F	TYR435
F	MET436
F	ALA439
F	LDA601

site_id	BC3
Number of Residues	7
Details	BINDING SITE FOR RESIDUE LDA F 601

Chain	Residue
F	TRP119
F	LEU171
F	ILE199
F	GLN206
F	PHE343
F	TYR398
F	FAD600

site_id	BC4
Number of Residues	29
Details	BINDING SITE FOR RESIDUE FAD G 600

Chain	Residue
G	GLY11
G	GLY12
G	GLY13
G	ILE14
G	SER15
G	LEU33
G	GLU34
G	ALA35
G	ARG36
G	GLY40
G	GLY41
G	ARG42
G	GLY58
G	SER59
G	TYR60
G	PRO234
G	VAL235
G	ALA263
G	ILE264
G	TRP388
G	TYR393
G	CYS397
G	TYR398
G	GLY425
G	THR426
G	GLY434
G	TYR435
G	MET436
G	LDA601

site_id	BC5
Number of Residues	7
Details	BINDING SITE FOR RESIDUE LDA G 601

Chain	Residue
G	TRP119
G	LEU171
G	ILE199
G	GLN206
G	PHE343
G	TYR398
G	FAD600

site_id	BC6
Number of Residues	28
Details	BINDING SITE FOR RESIDUE FAD H 600

Chain	Residue
H	GLY11
H	GLY12
H	GLY13
H	ILE14
H	SER15
H	GLU34
H	ALA35
H	ARG36
H	GLY40
H	GLY41
H	ARG42
H	GLY58
H	SER59
H	TYR60
H	PRO234
H	VAL235
H	ALA263
H	ILE264
H	TRP388
H	TYR393
H	CYS397
H	TYR398
H	GLY425
H	THR426
H	GLY434
H	TYR435
H	MET436
H	LDA601

site_id	BC7
Number of Residues	7
Details	BINDING SITE FOR RESIDUE LDA H 601

Chain	Residue
H	TRP119
H	LEU171
H	ILE199
H	GLN206
H	PHE343
H	TYR398
H	FAD600

site_id	BC8
Number of Residues	29
Details	BINDING SITE FOR RESIDUE FAD I 600

Chain	Residue
I	GLY11
I	GLY12
I	GLY13
I	ILE14
I	SER15
I	LEU33
I	GLU34
I	ALA35
I	ARG36
I	GLY40
I	GLY41
I	ARG42
I	GLY58
I	SER59
I	TYR60
I	PRO234
I	VAL235
I	ALA263
I	ILE264
I	TRP388
I	TYR393
I	CYS397
I	TYR398
I	GLY425
I	THR426
I	GLY434
I	TYR435
I	MET436
I	LDA601

site_id	BC9
Number of Residues	7
Details	BINDING SITE FOR RESIDUE LDA I 601

Chain	Residue
I	TRP119
I	LEU171
I	ILE199
I	GLN206
I	PHE343
I	TYR398
I	FAD600

site_id	CC1
Number of Residues	31
Details	BINDING SITE FOR RESIDUE FAD L 600

Chain	Residue
L	GLY11
L	GLY12
L	GLY13
L	ILE14
L	SER15
L	LEU33
L	GLU34
L	ALA35
L	ARG36
L	GLY40
L	GLY41
L	ARG42
L	GLY58
L	SER59
L	TYR60
L	ARG233
L	PRO234
L	VAL235
L	ALA263
L	ILE264
L	TRP388
L	TYR393
L	CYS397
L	TYR398
L	GLY425
L	THR426
L	GLY434
L	TYR435
L	MET436
L	ALA439
L	LDA601

site_id	CC2
Number of Residues	7
Details	BINDING SITE FOR RESIDUE LDA L 601

Chain	Residue
L	TRP119
L	LEU171
L	ILE199
L	GLN206
L	PHE343
L	TYR398
L	FAD600

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	30
Details	Site: {"description":"Important for catalytic activity"}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	10
Details	Modified residue: {"description":"N6-acetyllysine","evidences":[{"source":"UniProtKB","id":"Q8BW75","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	10
Details	Modified residue: {"description":"S-8alpha-FAD cysteine","evidences":[{"source":"PubMed","id":"11753429","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"12913124","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15027868","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15710600","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16366596","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1GOS","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1OJ9","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1OJA","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1OJC","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1OJD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1S2Q","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1S2Y","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1S3B","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1S3E","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2BK3","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2BK4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2BK5","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2BYB","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2C64","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2C65","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2C66","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2C67","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2C70","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2C72","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2C73","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2C75","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2C76","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2V5Z","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2V60","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2V61","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2VRL","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2VRM","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2VZ2","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2XFN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2XFO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2XFP","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2XFQ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3PO7","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ZYX","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4A79","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4A7A","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4CRT","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"5MRL","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

Catalytic Information from CSA

site_id	CSA1
Number of Residues	1
Details	Annotated By Reference To The Literature 1b5q

Chain	Residue	Details
A	GLY62

site_id	CSA10
Number of Residues	1
Details	Annotated By Reference To The Literature 1b5q

Chain	Residue	Details
L	GLY62

site_id	CSA2
Number of Residues	1
Details	Annotated By Reference To The Literature 1b5q

Chain	Residue	Details
B	GLY62

site_id	CSA3
Number of Residues	1
Details	Annotated By Reference To The Literature 1b5q

Chain	Residue	Details
C	GLY62

site_id	CSA4
Number of Residues	1
Details	Annotated By Reference To The Literature 1b5q

Chain	Residue	Details
D	GLY62

site_id	CSA5
Number of Residues	1
Details	Annotated By Reference To The Literature 1b5q

Chain	Residue	Details
E	GLY62

site_id	CSA6
Number of Residues	1
Details	Annotated By Reference To The Literature 1b5q

Chain	Residue	Details
F	GLY62

site_id	CSA7
Number of Residues	1
Details	Annotated By Reference To The Literature 1b5q

Chain	Residue	Details
G	GLY62

site_id	CSA8
Number of Residues	1
Details	Annotated By Reference To The Literature 1b5q

Chain	Residue	Details
H	GLY62

site_id	CSA9
Number of Residues	1
Details	Annotated By Reference To The Literature 1b5q

Chain	Residue	Details
I	GLY62

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)