1OEK
YodA from Escherichia coli crystallised with zinc ions
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005829 | cellular_component | cytosol |
| A | 0006882 | biological_process | intracellular zinc ion homeostasis |
| A | 0008270 | molecular_function | zinc ion binding |
| A | 0030288 | cellular_component | outer membrane-bounded periplasmic space |
| A | 0034224 | biological_process | cellular response to zinc ion starvation |
| A | 0042597 | cellular_component | periplasmic space |
| A | 0046870 | molecular_function | cadmium ion binding |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0070301 | biological_process | cellular response to hydrogen peroxide |
| A | 0071276 | biological_process | cellular response to cadmium ion |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ZN A 1194 |
| Chain | Residue |
| A | HIS144 |
| A | HIS155 |
| A | HOH2023 |
| A | HOH2025 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | BINDING SITE FOR RESIDUE ZN A 1195 |
| Chain | Residue |
| A | HIS153 |
| A | TYR177 |
| A | GLU189 |
| A | HIS193 |
| site_id | AC3 |
| Number of Residues | 3 |
| Details | BINDING SITE FOR RESIDUE ZN A 1196 |
| Chain | Residue |
| A | HIS95 |
| A | HOH2026 |
| A | GLU93 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | BINDING SITE FOR RESIDUE ZN A 1197 |
| Chain | Residue |
| A | ASP24 |
| A | GLN47 |
| A | HIS75 |
| A | HOH2027 |
| A | HOH2028 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 5 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"12909634","evidenceCode":"ECO:0000269"},{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"FEB-2009","submissionDatabase":"PDB data bank","title":"Crystal structure of refined tetragonal crystal of YodA from Escherichia coli.","authoringGroup":["Berkeley structural genomics center (BSGC)"]}},{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"FEB-2009","submissionDatabase":"PDB data bank","title":"Crystal structure of a hypothetical protein YodA.","authoringGroup":["New York structural genomix research consortium (NYSGXRC)"]}}]} |
| Chain | Residue | Details |
