1O5O
Crystal structure of Uracil phosphoribosyltransferase (TM0721) from Thermotoga maritima at 2.30 A resolution
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000287 | molecular_function | magnesium ion binding |
A | 0004845 | molecular_function | uracil phosphoribosyltransferase activity |
A | 0005525 | molecular_function | GTP binding |
A | 0005737 | cellular_component | cytoplasm |
A | 0006223 | biological_process | uracil salvage |
A | 0008655 | biological_process | pyrimidine-containing compound salvage |
A | 0016757 | molecular_function | glycosyltransferase activity |
A | 0044206 | biological_process | UMP salvage |
B | 0000287 | molecular_function | magnesium ion binding |
B | 0004845 | molecular_function | uracil phosphoribosyltransferase activity |
B | 0005525 | molecular_function | GTP binding |
B | 0005737 | cellular_component | cytoplasm |
B | 0006223 | biological_process | uracil salvage |
B | 0008655 | biological_process | pyrimidine-containing compound salvage |
B | 0016757 | molecular_function | glycosyltransferase activity |
B | 0044206 | biological_process | UMP salvage |
C | 0000287 | molecular_function | magnesium ion binding |
C | 0004845 | molecular_function | uracil phosphoribosyltransferase activity |
C | 0005525 | molecular_function | GTP binding |
C | 0005737 | cellular_component | cytoplasm |
C | 0006223 | biological_process | uracil salvage |
C | 0008655 | biological_process | pyrimidine-containing compound salvage |
C | 0016757 | molecular_function | glycosyltransferase activity |
C | 0044206 | biological_process | UMP salvage |
D | 0000287 | molecular_function | magnesium ion binding |
D | 0004845 | molecular_function | uracil phosphoribosyltransferase activity |
D | 0005525 | molecular_function | GTP binding |
D | 0005737 | cellular_component | cytoplasm |
D | 0006223 | biological_process | uracil salvage |
D | 0008655 | biological_process | pyrimidine-containing compound salvage |
D | 0016757 | molecular_function | glycosyltransferase activity |
D | 0044206 | biological_process | UMP salvage |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 10 |
Details | BINDING SITE FOR RESIDUE SO4 A 701 |
Chain | Residue |
A | LEU78 |
D | TYR115 |
A | ARG79 |
A | ALA80 |
A | ILE102 |
A | U5P600 |
A | HOH753 |
A | HOH754 |
A | HOH756 |
A | HOH757 |
site_id | AC2 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE SO4 B 702 |
Chain | Residue |
B | LEU78 |
B | ARG79 |
B | ALA80 |
B | U5P601 |
B | HOH768 |
C | TYR115 |
site_id | AC3 |
Number of Residues | 8 |
Details | BINDING SITE FOR RESIDUE SO4 C 703 |
Chain | Residue |
B | TYR115 |
C | LEU78 |
C | ARG79 |
C | ALA80 |
C | U5P602 |
C | HOH772 |
C | HOH773 |
C | HOH788 |
site_id | AC4 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 D 704 |
Chain | Residue |
A | TYR115 |
D | ARG79 |
D | ALA80 |
D | U5P603 |
D | HOH794 |
site_id | AC5 |
Number of Residues | 4 |
Details | BINDING SITE FOR RESIDUE SO4 A 705 |
Chain | Residue |
A | ARG187 |
A | ASN189 |
A | ASP190 |
A | HOH710 |
site_id | AC6 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 B 706 |
Chain | Residue |
B | ARG187 |
B | ASN189 |
B | ASP190 |
site_id | AC7 |
Number of Residues | 3 |
Details | BINDING SITE FOR RESIDUE SO4 D 708 |
Chain | Residue |
D | ARG187 |
D | ASN189 |
D | ASP190 |
site_id | AC8 |
Number of Residues | 6 |
Details | BINDING SITE FOR RESIDUE SO4 A 709 |
Chain | Residue |
A | GLY25 |
A | PRO26 |
A | ARG207 |
A | HOH748 |
A | HOH759 |
D | LYS70 |
site_id | AC9 |
Number of Residues | 5 |
Details | BINDING SITE FOR RESIDUE SO4 D 710 |
Chain | Residue |
A | LYS70 |
D | GLY25 |
D | PRO26 |
D | ARG207 |
D | HOH729 |
site_id | BC1 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE U5P A 600 |
Chain | Residue |
A | ARG104 |
A | MET133 |
A | ALA135 |
A | THR136 |
A | GLY137 |
A | VAL138 |
A | SER139 |
A | GLY192 |
A | TYR193 |
A | ILE194 |
A | GLY199 |
A | ASP200 |
A | ALA201 |
A | SO4701 |
A | HOH712 |
A | HOH737 |
A | HOH754 |
A | HOH755 |
A | HOH756 |
site_id | BC2 |
Number of Residues | 18 |
Details | BINDING SITE FOR RESIDUE U5P B 601 |
Chain | Residue |
B | ARG104 |
B | ASP131 |
B | MET133 |
B | ALA135 |
B | THR136 |
B | GLY137 |
B | VAL138 |
B | SER139 |
B | GLY192 |
B | TYR193 |
B | ILE194 |
B | GLY199 |
B | ALA201 |
B | SO4702 |
B | HOH707 |
B | HOH724 |
B | HOH768 |
B | HOH774 |
site_id | BC3 |
Number of Residues | 19 |
Details | BINDING SITE FOR RESIDUE U5P C 602 |
Chain | Residue |
C | ALA201 |
C | SO4703 |
C | HOH705 |
C | HOH707 |
C | HOH710 |
C | HOH774 |
C | HOH788 |
C | ARG104 |
C | MET133 |
C | ALA135 |
C | THR136 |
C | GLY137 |
C | VAL138 |
C | SER139 |
C | GLY192 |
C | TYR193 |
C | ILE194 |
C | GLY199 |
C | ASP200 |
site_id | BC4 |
Number of Residues | 17 |
Details | BINDING SITE FOR RESIDUE U5P D 603 |
Chain | Residue |
D | ARG104 |
D | MET133 |
D | ALA135 |
D | THR136 |
D | GLY137 |
D | VAL138 |
D | SER139 |
D | GLY192 |
D | TYR193 |
D | ILE194 |
D | GLY199 |
D | ASP200 |
D | ALA201 |
D | SO4704 |
D | HOH719 |
D | HOH733 |
D | HOH794 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 24 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01218 |
Chain | Residue | Details |
A | ARG79 | |
B | ILE194 | |
B | GLY199 | |
B | ASP200 | |
C | ARG79 | |
C | ARG104 | |
C | ASP131 | |
C | ILE194 | |
C | GLY199 | |
C | ASP200 | |
D | ARG79 | |
A | ARG104 | |
D | ARG104 | |
D | ASP131 | |
D | ILE194 | |
D | GLY199 | |
D | ASP200 | |
A | ASP131 | |
A | ILE194 | |
A | GLY199 | |
A | ASP200 | |
B | ARG79 | |
B | ARG104 | |
B | ASP131 |
Catalytic Information from CSA
site_id | CSA1 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1bd3 |
Chain | Residue | Details |
A | ARG104 | |
A | ASP200 | |
A | THR108 |
site_id | CSA2 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1bd3 |
Chain | Residue | Details |
B | ARG104 | |
B | ASP200 | |
B | THR108 |
site_id | CSA3 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1bd3 |
Chain | Residue | Details |
C | ARG104 | |
C | ASP200 | |
C | THR108 |
site_id | CSA4 |
Number of Residues | 3 |
Details | Annotated By Reference To The Literature 1bd3 |
Chain | Residue | Details |
D | ARG104 | |
D | ASP200 | |
D | THR108 |