Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1O0C

CRYSTAL STRUCTURE OF L-GLUTAMATE AND AMPCPP BOUND TO GLUTAMINE AMINOACYL TRNA SYNTHETASE

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004812molecular_functionaminoacyl-tRNA ligase activity
A0004819molecular_functionglutamine-tRNA ligase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006412biological_processtranslation
A0006418biological_processtRNA aminoacylation for protein translation
A0006424biological_processglutamyl-tRNA aminoacylation
A0006425biological_processglutaminyl-tRNA aminoacylation
A0043039biological_processtRNA aminoacylation
Functional Information from PDB Data
site_idAC1
Number of Residues6
DetailsBINDING SITE FOR RESIDUE SO4 A 1394
ChainResidue
AHIS40
AHIS43
AARG260
AMET268
ALYS270
AAMP998

site_idAC2
Number of Residues5
DetailsBINDING SITE FOR RESIDUE SO4 A 1395
ChainResidue
ALYS272
AGLY482
AVAL267
AMET268
ASER269

site_idAC3
Number of Residues13
DetailsBINDING SITE FOR RESIDUE GLU A 996
ChainResidue
AARG30
APRO32
AASP66
ATYR211
AHIS215
ALEU228
ACYS229
APHE233
AAMP998
AHOH1396
AHOH1475
AHOH1479
BA976

site_idAC4
Number of Residues16
DetailsBINDING SITE FOR RESIDUE AMP A 998
ChainResidue
APHE31
APRO33
AGLU34
AHIS40
AGLY42
AHIS43
ASER46
AARG260
ALEU261
ALYS270
AGLU996
ASO41394
AHOH1445
AHOH1475
AHOH1479
BA976

Functional Information from PROSITE/UniProt
site_idPS00178
Number of Residues12
DetailsAA_TRNA_LIGASE_I Aminoacyl-transfer RNA synthetases class-I signature. PepNGyLHIGHA
ChainResidueDetails
APRO33-ALA44

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00126, ECO:0000269|PubMed:23727144, ECO:0007744|PDB:4JXX, ECO:0007744|PDB:4JXZ, ECO:0007744|PDB:4JYZ
ChainResidueDetails
APRO35
AILE41

site_idSWS_FT_FI2
Number of Residues1
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00126, ECO:0000269|PubMed:12691748, ECO:0000269|PubMed:18477696, ECO:0000269|PubMed:9562563, ECO:0007744|PDB:1O0B
ChainResidueDetails
AASP67

site_idSWS_FT_FI3
Number of Residues1
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00126, ECO:0000269|PubMed:12691748, ECO:0000269|PubMed:15845536, ECO:0000269|PubMed:18477696, ECO:0000269|PubMed:9562563, ECO:0007744|PDB:1O0B, ECO:0007744|PDB:1ZJW
ChainResidueDetails
AASP212

site_idSWS_FT_FI4
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00126, ECO:0000269|PubMed:18477696, ECO:0000269|PubMed:23727144, ECO:0000269|PubMed:9562563, ECO:0007744|PDB:4JXX, ECO:0007744|PDB:4JXZ, ECO:0007744|PDB:4JYZ
ChainResidueDetails
ALEU261
ASER269
ALEU231

Catalytic Information from CSA
site_idMCSA1
Number of Residues3
DetailsM-CSA 850
ChainResidueDetails
APRO35proton shuttle (general acid/base)
ALEU261electrostatic stabiliser
AARG271electrostatic stabiliser

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon