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1NPX

STRUCTURE OF NADH PEROXIDASE FROM STREPTOCOCCUS FAECALIS 10C1 REFINED AT 2.16 ANGSTROMS RESOLUTION

Functional Information from GO Data
ChainGOidnamespacecontents
A0004601molecular_functionperoxidase activity
A0016491molecular_functionoxidoreductase activity
A0016692molecular_functionNADH peroxidase activity
A0098869biological_processcellular oxidant detoxification
Functional Information from PDB Data
site_idAC1
Number of Residues31
DetailsBINDING SITE FOR RESIDUE FAD A 449
ChainResidue
ALEU6
AGLY7
ASER9
AHIS10
AGLY11
AGLU32
ALYS33
ASER41
AOCS42
AGLU78
AILE79
ASER110
APRO111
AGLY112
AALA113
AARG132
ATYR159
AILE160
AASN247
AGLY280
AASP281
AALA297
ALEU298
AALA299
APHE424
AGLN425
AHOH453
AHOH491
AHOH501
AHOH533
AHOH752

site_idAC2
Number of Residues26
Details
ChainResidue
ASER9
AALA113
AARG132
ATYR159
AASN247
AGLY280
AASP281
AALA297
ALEU298
AALA299
APHE424
AHIS10
AHOH453
AHOH491
AHOH501
AHOH533
AHOH536
AHOH688
AHOH752
AGLY11
AGLU32
ALYS33
AILE79
ASER110
APRO111
AGLY112

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton acceptor => ECO:0000269|PubMed:8756456
ChainResidueDetails
AHIS10

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Redox-active => ECO:0000269|PubMed:8756456
ChainResidueDetails
AOCS42

site_idSWS_FT_FI3
Number of Residues7
DetailsBINDING: BINDING => ECO:0000269|PubMed:8425532, ECO:0000269|PubMed:8756456
ChainResidueDetails
AGLY7
AGLU32
AOCS42
ASER110
AARG132
AASP281
AALA299

site_idSWS_FT_FI4
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:8425532
ChainResidueDetails
AILE160
AASP179
ATYR188
AGLY243
AALA297
AGLY328

site_idSWS_FT_FI5
Number of Residues1
DetailsMOD_RES: Cysteine sulfenic acid (-SOH) => ECO:0000269|PubMed:8756456
ChainResidueDetails
AOCS42

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1get
ChainResidueDetails
AOCS42
AILE37

site_idCSA2
Number of Residues3
DetailsAnnotated By Reference To The Literature 1get
ChainResidueDetails
AHIS10
AARG303
ASER41

site_idMCSA1
Number of Residues4
DetailsM-CSA 895
ChainResidueDetails
AHIS10proton shuttle (general acid/base)
ASER41electrostatic stabiliser
AOCS42covalent catalysis, proton shuttle (general acid/base)
AARG303proton shuttle (general acid/base)

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PDB entries from 2024-08-28

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