Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

1NJJ

Crystal structure determination of T. brucei ornithine decarboxylase bound to D-ornithine and to G418

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0004586molecular_functionornithine decarboxylase activity
A0006596biological_processpolyamine biosynthetic process
A0016829molecular_functionlyase activity
B0003824molecular_functioncatalytic activity
B0004586molecular_functionornithine decarboxylase activity
B0006596biological_processpolyamine biosynthetic process
B0016829molecular_functionlyase activity
C0003824molecular_functioncatalytic activity
C0004586molecular_functionornithine decarboxylase activity
C0006596biological_processpolyamine biosynthetic process
C0016829molecular_functionlyase activity
D0003824molecular_functioncatalytic activity
D0004586molecular_functionornithine decarboxylase activity
D0006596biological_processpolyamine biosynthetic process
D0016829molecular_functionlyase activity
Functional Information from PDB Data
site_idAC1
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GET A 601
ChainResidue
AARG22
AASP243
ALEU339
APRO340
AGLN341
ALEU382
AGLU384
AASP385

site_idAC2
Number of Residues12
DetailsBINDING SITE FOR RESIDUE GET B 602
ChainResidue
BCYS26
BASP243
BPRO340
BGLN341
BARG342
BGLU343
BLEU382
BGLU384
BASP385
BHOH629
BHOH631
BARG22

site_idAC3
Number of Residues8
DetailsBINDING SITE FOR RESIDUE GET C 603
ChainResidue
CARG22
CASP243
CPRO340
CGLN341
CGLU343
CLEU382
CGLU384
CASP385

site_idAC4
Number of Residues17
DetailsBINDING SITE FOR RESIDUE ORX A 602
ChainResidue
ALYS69
AASP88
AHIS197
AGLY236
AGLY237
AGLU274
AGLY276
AARG277
ATYR331
AASP332
ATYR389
AHOH610
AHOH632
BTYR323
BCYS360
BASP361
BGLY362

site_idAC5
Number of Residues16
DetailsBINDING SITE FOR RESIDUE ORX B 603
ChainResidue
ATYR323
ACYS360
AASP361
BLYS69
BASP88
BARG154
BHIS197
BGLY236
BGLY237
BGLU274
BGLY276
BARG277
BTYR331
BASP332
BTYR389
BHOH604

site_idAC6
Number of Residues18
DetailsBINDING SITE FOR RESIDUE ORX C 604
ChainResidue
CLYS69
CASP88
CARG154
CHIS197
CGLY236
CGLY237
CGLU274
CGLY276
CARG277
CTYR331
CASP332
CTYR389
CHOH634
CHOH652
DTYR323
DCYS360
DASP361
DHOH467

site_idAC7
Number of Residues17
DetailsBINDING SITE FOR RESIDUE ORX D 426
ChainResidue
CCYS360
CASP361
CGLY362
DLYS69
DASP88
DHIS197
DGLY237
DGLU274
DPRO275
DGLY276
DARG277
DTYR331
DASP332
DTYR389
DHOH434
DHOH438
DHOH442

Functional Information from PROSITE/UniProt
site_idPS00878
Number of Residues19
DetailsODR_DC_2_1 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. YAvKCNddwrVLgtLaalG
ChainResidueDetails
ATYR66-GLY84

site_idPS00879
Number of Residues18
DetailsODR_DC_2_2 Orn/DAP/Arg decarboxylases family 2 signature 2. GtelgfnMhILDIGGGFP
ChainResidueDetails
AGLY222-PRO239

Catalytic Information from CSA
site_idCSA1
Number of Residues2
DetailsAnnotated By Reference To The Literature 1bd0
ChainResidueDetails
ALYS169
ALYS69

site_idCSA2
Number of Residues2
DetailsAnnotated By Reference To The Literature 1bd0
ChainResidueDetails
BLYS169
BLYS69

site_idCSA3
Number of Residues2
DetailsAnnotated By Reference To The Literature 1bd0
ChainResidueDetails
CLYS169
CLYS69

site_idCSA4
Number of Residues2
DetailsAnnotated By Reference To The Literature 1bd0
ChainResidueDetails
DLYS169
DLYS69

site_idCSA5
Number of Residues3
DetailsAnnotated By Reference To The Literature 1bd0
ChainResidueDetails
AGLU274
ALYS69
AHIS197

site_idCSA6
Number of Residues3
DetailsAnnotated By Reference To The Literature 1bd0
ChainResidueDetails
BGLU274
BLYS69
BHIS197

site_idCSA7
Number of Residues3
DetailsAnnotated By Reference To The Literature 1bd0
ChainResidueDetails
CGLU274
CLYS69
CHIS197

site_idCSA8
Number of Residues3
DetailsAnnotated By Reference To The Literature 1bd0
ChainResidueDetails
DGLU274
DLYS69
DHIS197

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon